Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00326 ATGGAAATCACAGAGGAGCAACGGAAGCGAGCAGAGACGAACCGTTTAGCGGCCTTGGCGAAACGTAAAGCACTGATCGAATCTTGTTCCAGTGATTTTCCAAAGAAAGATTCTTGGAATCTGTTCAAATGTCGGAAGATTTCTTCTCGATTCCGTGCTAAAACTGGAGCCCAATTACAGAAACAGCACGAAAATCTTTTGTTCGATCCGGTTTCGACCACCCGCTTGGACGATAGGTTTAGGGTCAGGCTCGAAATTTGCTCCCCAGATTCATTCTCTGCGACACCCGAGTTAGTTCGGGGATTTCAGTATCCGGGAGAAGAAGCATGCTTTAGGAGACTGAACGAGTGTTTATCAGATGTTATGCCATCACACTTTACACAAAACAATGGCGGTGGAAAGGCATGCGTGTATAAGTTAAGGGATTACAATGCAATTTTGAAATGTTTAAAAAGCTCCATAACTATTGAAGCTGAAGAGATTCCTTGGGCAACTTTTAATGTGGTTGAGAAGCTCTCACATTCATTTTTTGCGGGGCGGTGGATTCCGTGCAGGCCGGAGCATTTTTCAGATGATAAGGTTGATCAATTAATTGACAATTTGCCAAAAAAGTTGGTACACATGCTCTTACCTTTTCAGCTTGAGGGCGTCAAATTTGGTTTGCGAAGAGGGGGCCGGTGTCTAATTGCTGATGAAATGGGCCTTGGAAAGACAGTCCAGGCTATTGCCATTGCTGGTTGTTTCATGAATGAAGGTTCCATACTTGTTGTTTGCCCAGCAATATTACGTTTTTCATGGGCTGAAGAACTGGAGCGGTGGCTTCCATTTTGCTCACCGGCAGATATTCATCTTGTTTTTGGTCATCGAGACAATCCTTCTAATTTACCAAAATTGCCTAAAGTTGTCGTTATTTCTTATACAATGCTTTATCGTTTGCGTAAGAGCATGCTTGAGCAAGAATGGGCTCTCTTAATTGTTGATGAATCTCACCATGTAAGATGTACAAAGAAGGCATCAGAACCAGAAGAGATAAAAGCCGTTCTTGATCTGGCTACTAAGGTCAAGCATATAGTTCTACTATCAGGGACTCCGTCTTTGACAAGGTTACCGTACGACATTTTTCATCAGATAGACATGTTATGGTCTGGTTTGCTGGGAAAGACCAAGTATTGTTTTGCAAAAACTTACTGTGCAGTTGAATACGTTACCACTGCTCAGGGAAAAACGTTTCAGGATTTCTCAAAGGGAATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACAGTCATGATTAGACGTTTGAAAGAACATGTGCTTGTTCAGCTACCTCCCAAACGCAGGCAAATTATAAGATTGTTGTTAAAGAAATCAGACATAATTGCAGCAAAGGTTGTTGTTAGGGAGTTACATAATGGCCACATTGAGAGAAGTGCTGGGGAGACTCTAGACAAATCTTATGGTAAGAATAATGGGAAAGTAAGAATGGGACAACTCAACTATCAAGAAGTAGGTATTGCAAAACTGTCTGGGTTTCGGGAATGGTTTTGCATTCACCCTTTAATTACACAAAGTGATGGAGTAGTGGACTTGGATTCCATGTGTAGTTCTCAAAAAATGATCATTTTTGCCCATCATCATAAAGTGCTTGATGGAGTACAACAACTCGTGTGCGAGAGAGGGATTGGCTTTGTCCGCATTGATGGAAGCACCCTCGCTAGGGAAAGGCAGTCAGCAGTTAAATCATTCCAGTCATCAGCTGAGGTGGTCAAAATTGCGATAATCGGTGTAACTGCTGGTGGTGTTGGACTTGATTTCTCATCAGCACAAAATGTTGTCTTCTTGGAGCTTCCTCAGTCACCATCATTGATGCTTCAGGCTGAGGATAGAGCTCACAGACGAGGACAAACAAACGCGGTCAACGTGTACATCTTCTGTGCGAAGGATACTTTGGATGAGTCACTTTGGCAAAGTTTAACCAAGAGCCTACGCTGTGTTTCTTCTGCAACAAATGGGAAATATGATGCAATTCAAGAGATAGAGGTTGACACTGTTTCTTATCTAAAAACTTCTGATAAAACTGAGACAAGTTTTGGAGATCAGCTTTTGGACGTAGCAGCATGTGATGAGCCCTCATCTGTAAATACAGAGCCACAAGATAAGGACTTTGTCAAGGATGTGTACTCTACTGAAGTGCATGATGAAGTAGCCGAAAATACTAATGATCAGTGTATTAAACTTCACAAAAATCTTAGTTCTTCAACTAAAACAGACATACCCCATGAGGATCCTAATTTTAAGGTTGTGGAAGTAGAAAAGGGTTTGTTCTTAGAAAGCAAAATGAAAGAAACTTCGGAAGCTGAAACTGAGAATCTTAACAGAGTTCTCTCTCCTCGATCGGATCGACTCAATGGAGGCAACGATCAAGCAAAGAAAGAACAAAATTTCTATGATCAAACAGAAAAGATACATGGACCAGATATACCCAGTGAAACTAATAGAAGTTACACTAAGGATGCAGATTCTTTACGATTTGAGGTGAGCCAATATACCGGAAGGATTCACTTGTATGCCTGCATATCTGGTACCGATTTGAGGCCAAGACCACTTTTTGTCAATTTTCGACCCGAGGAACTTGAAATATTGACTTCAGATGATAATGAGTGGGCAGAGGCCAATTCCTTGAAAGAGACATCAATATCGAAAAATGCTCTTCATGCATTTATTGAAGAGTGGAACAGATTAAGACCCATTGAACGAAAAAAGTTGCTTGGAAAACCTTTGCAACTTCCTTTAGATGTCGAGTTATGCTACTTGAGGGAAAACATCCATCACAACACTAATGGAATACTGAAGATTAAAAGTAAGCGACGCAATACACCTTTTAACGAGATTAGCCAACCGTTACCGGCAAATGCTGTTTGGAAAACAATCCAAATATGTGTTGGCTCTGGGAAAAAGAAGAAAGAATACATTCAGGGTTGGACCTTGACAGATGAACCACTATGCAAACTTTGTCAAATGCCATGCATAGGCAACAATGCCAAGATACCTCAGTTTTTTGAGGATCTTTTCTGTAACCTTGGATGCTACGAAGAATATCGAATTAGGATTAGTAGCACATCCCTCCGACAGGAGCTTTTTCAAATAGAACATGGTATCTGCTCAAATTGTCATTTGGACTGTCATAAACTTGTAAGGCATATAAAACCTTTATCATTGGCCATGAGGCGAGAATACGTGGAGAAAGTTGCACCAAATGTAGCAAGAAGGAAGAAATTACTCGATAAGCTTGTTGATAATCCAAGTGAGGGAAACGCATGGCATGCAGACCACATTGTTCCTGTCTACCAAGGTGGAGGGGATCTAATGCCATGTGAATTTTTCAAAGGAGAGTGTCGGTTAGAGAACATGAGGACTCTATGTGTGGCCTGCCATTCTGATGTTACAGCAGCACAATGCTCAGAACGACGCTCGACAAGGCTGAAGGCAAAGAAGCAACTCAAAGTAATTATGAAGGAACTTGTAAAATCAAAAAACATGGAGAGTACCGAGTCTAGAATCAAGGTTTGTATTTTTCACAAGTATGGCTAG 3594 41.18 MEITEEQRKRAETNRLAALAKRKALIESCSSDFPKKDSWNLFKCRKISSRFRAKTGAQLQKQHENLLFDPVSTTRLDDRFRVRLEICSPDSFSATPELVRGFQYPGEEACFRRLNECLSDVMPSHFTQNNGGGKACVYKLRDYNAILKCLKSSITIEAEEIPWATFNVVEKLSHSFFAGRWIPCRPEHFSDDKVDQLIDNLPKKLVHMLLPFQLEGVKFGLRRGGRCLIADEMGLGKTVQAIAIAGCFMNEGSILVVCPAILRFSWAEELERWLPFCSPADIHLVFGHRDNPSNLPKLPKVVVISYTMLYRLRKSMLEQEWALLIVDESHHVRCTKKASEPEEIKAVLDLATKVKHIVLLSGTPSLTRLPYDIFHQIDMLWSGLLGKTKYCFAKTYCAVEYVTTAQGKTFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLVQLPPKRRQIIRLLLKKSDIIAAKVVVRELHNGHIERSAGETLDKSYGKNNGKVRMGQLNYQEVGIAKLSGFREWFCIHPLITQSDGVVDLDSMCSSQKMIIFAHHHKVLDGVQQLVCERGIGFVRIDGSTLARERQSAVKSFQSSAEVVKIAIIGVTAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESLWQSLTKSLRCVSSATNGKYDAIQEIEVDTVSYLKTSDKTETSFGDQLLDVAACDEPSSVNTEPQDKDFVKDVYSTEVHDEVAENTNDQCIKLHKNLSSSTKTDIPHEDPNFKVVEVEKGLFLESKMKETSEAETENLNRVLSPRSDRLNGGNDQAKKEQNFYDQTEKIHGPDIPSETNRSYTKDADSLRFEVSQYTGRIHLYACISGTDLRPRPLFVNFRPEELEILTSDDNEWAEANSLKETSISKNALHAFIEEWNRLRPIERKKLLGKPLQLPLDVELCYLRENIHHNTNGILKIKSKRRNTPFNEISQPLPANAVWKTIQICVGSGKKKKEYIQGWTLTDEPLCKLCQMPCIGNNAKIPQFFEDLFCNLGCYEEYRIRISSTSLRQELFQIEHGICSNCHLDCHKLVRHIKPLSLAMRREYVEKVAPNVARRKKLLDKLVDNPSEGNAWHADHIVPVYQGGGDLMPCEFFKGECRLENMRTLCVACHSDVTAAQCSERRSTRLKAKKQLKVIMKELVKSKNMESTESRIKVCIFHKYG 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3808995 3827162 + BLOR06720 Blo15g00326 70726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00326 1197 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1173 - -
Blo15g00326 1197 SMART helicmild6 551 635 IPR001650 -
Blo15g00326 1197 Coils Coil 1 21 - -
Blo15g00326 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 434 IPR027417 -
Blo15g00326 1197 CDD HNHc 1100 1150 IPR003615 -
Blo15g00326 1197 Gene3D - 1031 1179 - -
Blo15g00326 1197 Gene3D - 521 718 IPR027417 -
Blo15g00326 1197 Gene3D - 187 432 IPR038718 -
Blo15g00326 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 527 688 IPR001650 -
Blo15g00326 1197 Pfam Helicase conserved C-terminal domain 537 635 IPR001650 -
Blo15g00326 1197 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1173 - -
Blo15g00326 1197 CDD SF2_C_SNF 536 646 - -
Blo15g00326 1197 Pfam SNF2-related domain 227 459 IPR000330 GO:0005524|GO:0140658
Blo15g00326 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 382 IPR014001 -
Blo15g00326 1197 SMART ultradead3 205 390 IPR014001 -
Blo15g00326 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 688 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00326 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - jre:108979869 1491.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00123 Blo-Chr7:1685591 Blo15g00326 Blo-Chr15:3808995 3.49E-72 dispersed
Blo15g00326 Blo-Chr15:3808995 Blo01g00085 Blo-Chr1:1144467 1.55E-28 dispersed
Blo15g00326 Blo-Chr15:3808995 Blo14g00290 Blo-Chr14:2904818 3.85E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13326 PF00176 SNF2_N 1.10E-22 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00326 Blo_Chr15 FPKM 22.066357 22.698778 1.72187 1.862725 1.973464 2.67884 2.291865 0.0 0.069631 0.073937