Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00330 ATGAGGAGCTTGAGCCGAGTGCAGAAGAATGGTGACAGAGCTGTTGAACTCTCTAGAGAGTGGAGTCCGAGAGATGTGAAGGAGAGGGCTTGGTTAGAGAGCTCTTGGGTCTCTGTAATCTTTCATGTGGAGCTCTCTGGTGTTGGACTGTTGGCTGAGGACTTCCCTGTCTGCTGTGTTAAAGTTATAGAATTCGATGAGAAGTTGTCAATGATAAATGTTTTGATCATGAATGTATCAGAAGAAAAGAAGAATGAAGATTACGTGCTAATATGCGTTATCGCTTCGAGGAGGAGGGGACCTGGGATTTTGGCAGGAAGGAGGTGCGAGAACGAGAGTATAATAACTCCAGTCCAAGTGAGTTTGGCCAAACAAGCAACATCACCTGCTGATGTTGTGGAAAAGCTGGAAGAAGTTGGATTATCATCCACCAGCGAAACGCAAGCTTTTGCTGAGGAAATATTTTCCAGAGTGCCACATAAATCATCTGGTTTAAATCATTATCAAAGGCAAGAGAGGGAAGCTGCTATGTTGGTGAGAAAGCAGAAATCTTATGCAATATTGGATGCTGATGACGATGAGGATGAAGTAAATGGTATAGGGGGTGGCAGTAATAAAACTTCTCTGGCTGTAGCATCTGACAGTTCAAAAGATATTGCACAAGGAGAAGAGAAGCGAGTTAAAAGACAGATTCATGGTTCAGAAGATGATGGTTCTGAGTCAGAAGAAGAAAGACTACGGGATCAAAGGGAGAGGGAGCAGTTAGAACGCAATATTAGAGACCGTGATGCAGCTGGGACACGGAAGTTGACAGAGTCAAAGTTAACCCGAAGGGAGGAAGAAGAGGCAATCCGGAGATCAAATGCATTCGAGCAAAATGAACTTGAAATTTTAAGGAAAGTTTCAAGACAAGAATATTTAAAAAAAAGGGAGCAAAAGAAACTCGATGAAATTAGAGATGACATTGAAGATGAGCAATATTTGTTTGAAGGTGTAAAGCTCACTGATGCAGAATACCGTGAGTTAAGGTACAAAAAGGAAATTTATGAGCTTGTGAAGAAACGATCAGAGGAAGTTGACAACAGCACTGAGTACAGGATGCCAGATGCATATGACCTAGATGGTAGAATTAATCAAGAGAAGAGATTTTCTGTAGCGGTGCAGCGCTATAGGGATCCAAGTGCTGTGGAGAAAATGAATCCATTTGCGGAACAAGAGGCTTGGGAGGAGCATCAAATTTCGAAAGCAAACTTGAAATTTGCTTCCAAAAGTAAAAAGCAACTCTCTGATGACTATCAGTTTGTTTTTGAAGACCAGATTGAGTTCATCAAGGCATCAGTAATGGAAGGCGATGAGTTTTCAGAACAACCAACTGAGTTACTTGAAAAGTTAGCGGCAAAATCCGCTCTGGAGAAACTTCAGGAGGATAGAAAAACTTTACCAATATACCCATATCGTGAAGAATTGCTCCAAGCTGTTAACGATCATCAGGTTCTTGTTATTGTGGGGGAAACTGGTTCAGGAAAGACTACCCAGATACCCCAATATCTTCATGAAGCTGGGTATACCAAACGTGGACAGATTGGATGTACCCAACCACGTCGAGTTGCTGCTATGAGTGTCGCTGCCAGAGTTTCTCAAGAAATGGGTGTCAAACTCGGGCATGAGGTTGGTTATTCCATACGATTCGAGGATTGCACATCAGAGAAAACTGTCTTAAAATATATGACAGATGGGATGCTGTTAAGAGAATTCTTGGGTGAGCCTGATCTTGCAAGCTACAGTGTGGTCATGGTGGATGAGGCTCATGAAAGAACCCTGTCAACTGACATTCTATTTGGTCTAGTTAAGGATATATCACGATTTCGGCCTGATCTTAAATTGTTGATTTCAAGTGCAACACTTGACGCTGAGAAATTTAGTGACTACTTTGACTCTGCTCCAATATTCAAAATTCCTGGAAGACGGTATCCAGTTGAAATAAACTTTACGAAAGCACCTGAAGCTGATTACTTAGATGCAGCAATAGTGACAGCGCTTCAGATTCATGTAACACAATCTCCCGGAGATATATTAGTGTTTCTCACTGGCCAAGAAGAAATTGAAACAGCGGAAGAAATTTTGAAGCACAGAACGAGGGGTCTTGGTACAAAGATAGCAGAGCTAATCATCTGCCCTATATATGCCAACCTACCAACAGAGCTGCAAGCTAAGATTTTTGAGCCTACTCCAGAAGGGGCAAGGAAGGTTGTTTTAGCAACTAATATAGCAGAGACATCTTTGACGATTGATGGGATCAAATATGTTATTGACCCTGGTTTTTGCAAGATGAAAACCTATAATCCTAGGACGGGGATGGAATCTCTGCTAATTGCTCCCATTTCTAAAGCATCAGCAAATCAGAGGGCAGGTCGATCAGGACGAACAGGGCCTGGAAAGTGCTTCCGTCTGTATACTGCCAACAATTACTACACTGATCTGGATGACAATACTGTGCCAGAAATACAGCGGACAAACCTAGCAAATGTTGTATTAACTCTCAAGAGTCTTGGAATTCATGACCTAATAAATTTTGATTTTATGGATCCACCACCATCTGAAGCATTAATAAAATCCCTAGAACTACTATTTGCACTGAGTGCCTTAAATAGTCTTGGTGAATTGACTAAAATGGGCAGGCGAATGGCTGAGTTTCCTCTTGATCCCATGCTGTCAAAAATGATTGTCGCATCTGACAAGTATAAGTGCTCAGATGAGATCATTTCCATTGCTGCTATGCTTTCTATTGGAAATTCAATCTTTTATCGTCCAAAGGATAAACAAGTTCATGCCGACAATGCAAGAATGAATTTTCATGCTGGAAATGTGGGAGACCACGTTGCCCTACTTAAGGTCTATAACTCTTGGAAAGAAACAGACTTCTCAACGCAGTGGTGTTATGAGAATTACATTCAGGTTAGGAGTATGAAGCGTGCTCGGGACATTAGAGATCAACTTGAGGGGCTCTTAGAAAGGGTTGAGATTGAGGTCACTTCAAATTCCGGTGATCTAGAGGCTATAAAGAAGGCCATAACATCGGGATTCTTCCCTCATTGTGCGAGGCTACAGAAGAATGGATCTTACCGCACAGTTAAATTCCCACAAACTGTTCATATACATCCAAGCTCGGGGCTGGCACAGGTTCTTCCAAGATGGGTCGTGTACCATGAATTGGTTCTCACATCGAAAGAATATATGAGACAAGTAACAGAACTGAAGCCTGAATGGTTGATTGAATTAGCTCCTCATTACTACCAAATGAAGGATGTGGAAGACTCGGGTTCTAAGAAAATGCCTCGAGGAGAAGGTCGCGCATCGAATGACTTGCAGCACATTAATCAGTGA 3384 41.99 MRSLSRVQKNGDRAVELSREWSPRDVKERAWLESSWVSVIFHVELSGVGLLAEDFPVCCVKVIEFDEKLSMINVLIMNVSEEKKNEDYVLICVIASRRRGPGILAGRRCENESIITPVQVSLAKQATSPADVVEKLEEVGLSSTSETQAFAEEIFSRVPHKSSGLNHYQRQEREAAMLVRKQKSYAILDADDDEDEVNGIGGGSNKTSLAVASDSSKDIAQGEEKRVKRQIHGSEDDGSESEEERLRDQREREQLERNIRDRDAAGTRKLTESKLTRREEEEAIRRSNAFEQNELEILRKVSRQEYLKKREQKKLDEIRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYELVKKRSEEVDNSTEYRMPDAYDLDGRINQEKRFSVAVQRYRDPSAVEKMNPFAEQEAWEEHQISKANLKFASKSKKQLSDDYQFVFEDQIEFIKASVMEGDEFSEQPTELLEKLAAKSALEKLQEDRKTLPIYPYREELLQAVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGQIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTQSPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKTYNPRTGMESLLIAPISKASANQRAGRSGRTGPGKCFRLYTANNYYTDLDDNTVPEIQRTNLANVVLTLKSLGIHDLINFDFMDPPPSEALIKSLELLFALSALNSLGELTKMGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHAGNVGDHVALLKVYNSWKETDFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNSGDLEAIKKAITSGFFPHCARLQKNGSYRTVKFPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQMKDVEDSGSKKMPRGEGRASNDLQHINQ 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3864628 3897941 + BLOR06724 Blo15g00330 70730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00330 1127 Coils Coil 238 258 - -
Blo15g00330 1127 MobiDBLite consensus disorder prediction 193 283 - -
Blo15g00330 1127 PANTHER OS05G0389800 PROTEIN 223 1119 - -
Blo15g00330 1127 MobiDBLite consensus disorder prediction 1104 1127 - -
Blo15g00330 1127 CDD SF2_C_RHA 657 818 - -
Blo15g00330 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 653 IPR014001 -
Blo15g00330 1127 Gene3D - 656 831 IPR027417 -
Blo15g00330 1127 Gene3D - 434 655 IPR027417 -
Blo15g00330 1127 PANTHER ATP-DEPENDENT RNA HELICASE 223 1119 - -
Blo15g00330 1127 MobiDBLite consensus disorder prediction 218 283 - -
Blo15g00330 1127 CDD DEXHc_DHX16 480 652 - -
Blo15g00330 1127 Pfam Helicase associated domain (HA2) 872 946 IPR007502 GO:0004386
Blo15g00330 1127 Pfam Helicase conserved C-terminal domain 682 810 IPR001650 -
Blo15g00330 1127 Gene3D - 855 1014 - -
Blo15g00330 1127 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 595 604 IPR002464 -
Blo15g00330 1127 SMART ultradead3 478 662 IPR014001 -
Blo15g00330 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 1003 IPR027417 -
Blo15g00330 1127 Coils Coil 989 1009 - -
Blo15g00330 1127 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1020 1097 IPR011709 -
Blo15g00330 1127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 851 IPR001650 -
Blo15g00330 1127 SMART ha2_5 871 963 IPR007502 GO:0004386
Blo15g00330 1127 SMART helicmild6 702 810 IPR001650 -
Blo15g00330 1127 MobiDBLite consensus disorder prediction 201 215 - -
Blo15g00330 1127 Coils Coil 308 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00330 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - jre:108990957 1679.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00333 Blo-Chr6:19868456 Blo15g00330 Blo-Chr15:3864628 4.12E-21 dispersed
Blo10g00334 Blo-Chr10:5031762 Blo15g00330 Blo-Chr15:3864628 0 dispersed
Blo11g00166 Blo-Chr11:1293237 Blo15g00330 Blo-Chr15:3864628 2.17E-171 dispersed
Blo11g00206 Blo-Chr11:1660987 Blo15g00330 Blo-Chr15:3864628 4.07E-178 dispersed
Blo15g00330 Blo-Chr15:3864628 Blo09g00447 Blo-Chr9:15557892 9.44E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00330 Blo_Chr15 FPKM 70.934105 89.942833 9.781518 7.950232 12.309586 11.660407 10.834472 7.830188 6.556769 7.416706