Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00333 ATGGTGTCGAGGAGTGTTGCACCATCCATTGTTGAAGAATCCATTAACTACGGAATTGAGGTGGATCCTATTTCAGCAGTCGAAGCCGATGAGCAACATCCGTTCTATCACGAACCTGGTATAGAGGTGCATTCAATCTCGGCATCTCTAGACTTGGAGCTTTGTTTAATACGAGACTCAGAAGATGATGATTGGACAGAGATATGGAAGGAGTTTCTGTGGGGCGCTGTTGCTGGTGCTTTTGGTGAAGGAATGATGCACCCTGTCGACACTCTGAAAACTCGTGTTCAAAGTCAAGCAATTCTTATTGGAAGTCAGAATCAAAAGAGCACGCTGAAAATGGTCCAGTCAATCTGGAAAACAGATGGATCTTGTTTTCTCATTTCTTTAATGTTAATGCATAGGCATCTAATAAAGTTTCTAGGCTTTTACAGGGGGATTGCTCCTGGAATTACAGGTTCTCTTGCCACTGGAGCTACATATTTTGGTCTTATAGAGTCCTCTAAAAAGTGGATAGAAGAATCTCACCCTAACTTTAGTCCTCACTGGGCACATTTCATTGCAGGAGCAGTGGGAGATGCACTTGGTTCCTTTATATATGTTCCATGCGAAGTGATTAAGCTACGCATGCAAGTTCAAGGTGCAAGGACTTCTTGGAGTTCGTCTGTTATTAAGGACGGCATTTCTAGGAAACATGGTGTACAAATGTATGGTTATTATACAGGAATGTTACAAGCTGGCTGTTCAATATGGAAGGAGCAAGGGATGAAAGGATTATTTGCAGGATATTGGTCCACCCTTGCGAGAGATCTGCCATTTGCTGGTCTAATGGTGATGTCTTACGAAACACTGAAAGATTTAACGCAGCACGCAAAGCAATCCTGGTCACACCATTCACATTACAATGTCAGCAGCTCCCTTGAAGGACTAATTCTAGGGGGATTAGCCGGCGGTTTGAGTGCATATCTTACAACTCCCTTGGATGTCATCAAAACTAGATTGCAAGTTCAAGGATCAACATTAAGGTACCAAGGCTGGTTAAATGTGATGCATAGTATATGGAGGAAGGAAGGTTTGAAGGGTATGTTTAGAGGAAGCATCCCCAGAGTTACATGGTATATGCCAGCTTCTGCGCTTACTTTCATGACTGTCGAGTTTCTGAGAGATCGTTTCAACCAAGCCTCGGACAACGGATCATTGCCCAAAGTTTCTTCCTTCTCGTCTGTTGTGGAAAAGAAGGGGTCTCTGCAAAAGGTGAGCTGA 1263 43.39 MVSRSVAPSIVEESINYGIEVDPISAVEADEQHPFYHEPGIEVHSISASLDLELCLIRDSEDDDWTEIWKEFLWGAVAGAFGEGMMHPVDTLKTRVQSQAILIGSQNQKSTLKMVQSIWKTDGSCFLISLMLMHRHLIKFLGFYRGIAPGITGSLATGATYFGLIESSKKWIEESHPNFSPHWAHFIAGAVGDALGSFIYVPCEVIKLRMQVQGARTSWSSSVIKDGISRKHGVQMYGYYTGMLQAGCSIWKEQGMKGLFAGYWSTLARDLPFAGLMVMSYETLKDLTQHAKQSWSHHSHYNVSSSLEGLILGGLAGGLSAYLTTPLDVIKTRLQVQGSTLRYQGWLNVMHSIWRKEGLKGMFRGSIPRVTWYMPASALTFMTVEFLRDRFNQASDNGSLPKVSSFSSVVEKKGSLQKVS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3955856 3963673 - BLOR06727 Blo15g00333 70733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00333 420 SUPERFAMILY Mitochondrial carrier 64 387 IPR023395 -
Blo15g00333 420 Gene3D Mitochondrial carrier domain 231 411 IPR023395 -
Blo15g00333 420 Pfam Mitochondrial carrier protein 307 393 IPR018108 -
Blo15g00333 420 Pfam Mitochondrial carrier protein 65 174 IPR018108 -
Blo15g00333 420 Pfam Mitochondrial carrier protein 181 290 IPR018108 -
Blo15g00333 420 Gene3D Mitochondrial carrier domain 48 230 IPR023395 -
Blo15g00333 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 66 171 IPR018108 -
Blo15g00333 420 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 68 407 - -
Blo15g00333 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 287 IPR018108 -
Blo15g00333 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 304 390 IPR018108 -
Blo15g00333 420 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 68 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00333 - - - qsu:112036072 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00333 Blo-Chr15:3955856 Blo19g00317 Blo-Chr19:20543812 2.88E-37 dispersed
Blo15g00333 Blo-Chr15:3955856 Blo18g00217 Blo-Chr18:2144376 2.51E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00333 Blo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0