Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00339 ATGGCGAAGACTGCGACACCATATGGAATTTTGAAGATTCAGGCTAATCCAACTCCGGAATCGTCCTCAGAAGTCTCGGATTTAGTGCTTCAGGTTCTCGATCTTAAAGCCGCGGGCAATCGTTACATGTTTACAGCCAGCGATGGAACTATGAAGTTGAAAGCCATTCTACCATCGAATCTCACTTCCGAGGTGGTCTCAGGGAAGATTCAGAACCTAGGCCTTATTCGCATTATTGATTATTCCCTCAATGACATCCCAAACAAGTCGGAGAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATTACGAACGTAGTCAAGAGTGAGGAATCTGAAATTTTTCTGACACCAAAACAAGAAAATGACTGCGAGAGTGAATTCAAAGCAGAAAATCCAGGGATACTTCTAAAGCCAAAGCCTGAAATGTTTGCAAAATCTGCAGCTCAAATCGTAAATGAACAAAGATCGAACTTGGCCCCAACTGCACGCATGGCCATGACAAGGAGAGTTCATCCTCTTCTTTCATTGAATCCCTACCAAGGCAATTGGACAATTAAAGTTCGTGTCACGAATAAGGAGGTTATGCGTAATTACAAGAATGCCAGGGGAGAAGGCTGCGTCTTCAATGTCGAATTGACTGATGATGATGAAACCCAAATACAGGCAACAATGTTCAATGAAGCTGCTAGAAAGTTCTATGATAAATTCGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTAAAGGTTGCTAACAAGAAATTCAATACAGTGAAAAATGATTATGAAATGACTTTAAATGAGAATTCAGAGGTGGAAGAGGCCATCAATGAAGCTACTTTTGTGCCTGTGACGAAATTCAATTTTGTCCCAATTGATATGCTGGGTCCTTACGTGAATGGAAAAGAACTTGTTGATGTTATTGGAGTGGTTCAAAATGTTTCTCCTACAATCAGTATTCGAAGGAAGATCAATAATGAAACTGCTCCGAAGCGTGAAATAACTATTGCTGATGAAACAAAAAAAACAGTAGTAGTCTCACTATGGAATGAGCTCGCAACTAATGTGGGACAGGAGTTACTCGACATGGTGGATCAATCACCCGTAATTGCTATTAAGTCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCGGTGAGTAAAAGCAAACTGCTAGTAAATCCAGACATACCTGAGGCAAAAAAGTTAAAGTTATGGTTTGATTCTGAAGGCAAAGGAGCATCAATGGCGTCCGCTGGCTCTAGTTTGAGCCCATCATCCAAGAACGGAGCAAGGTCTATGTATTCTGACCGGATATCTTTGTCTTACTTAATACAAAACCCATCACTAGGGGATGATAAGATTGAGAAATTAAATAACGTGGCAGCACCAATGTTCTTCAGCATTAGAGCATATATTAGCTCCATCAAACCTGATCAGACTATGTGGTACCGAGCTTGCAATGCTTGCAACAAGAAGGTGACTGATGCTATAGGTTCTGGATTCTGGTGTGAAGGTTGCCAGAAAAGTGATGGAGAATGCAGTTTAAGATATATTATGGTAGTTAGAATTTCGGATGCCAGCGGGGAAGTGTATCTCTCTCTCTTCAATGACGAGGCAGAAAAAGTCATTGGATGCACAGCTGATGAGCTTGACAAAATGAAATCACAGATTGGTGAAGAGAATTCATATGAGATGAAATTGAAAGAGGCTACTTGGGTTCCTTATCTATTTAGAGTAAGCGTTTCTCAGAATGAATACAACAACGAGAAGAGGCAGAGGATTACTGCCAGAGCTGTTGCTCCTGTCGATTTTGCTTCTGAATCCAGACTTTTGCTTGAAGCAATTTCGGGTTCAAGATTTTCAAAATGA 1905 40.58 MAKTATPYGILKIQANPTPESSSEVSDLVLQVLDLKAAGNRYMFTASDGTMKLKAILPSNLTSEVVSGKIQNLGLIRIIDYSLNDIPNKSEKYLIVTKCEVVSPALEMEITNVVKSEESEIFLTPKQENDCESEFKAENPGILLKPKPEMFAKSAAQIVNEQRSNLAPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEVMRNYKNARGEGCVFNVELTDDDETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKKFNTVKNDYEMTLNENSEVEEAINEATFVPVTKFNFVPIDMLGPYVNGKELVDVIGVVQNVSPTISIRRKINNETAPKREITIADETKKTVVVSLWNELATNVGQELLDMVDQSPVIAIKSLRVGDFQGVSLSSVSKSKLLVNPDIPEAKKLKLWFDSEGKGASMASAGSSLSPSSKNGARSMYSDRISLSYLIQNPSLGDDKIEKLNNVAAPMFFSIRAYISSIKPDQTMWYRACNACNKKVTDAIGSGFWCEGCQKSDGECSLRYIMVVRISDASGEVYLSLFNDEAEKVIGCTADELDKMKSQIGEENSYEMKLKEATWVPYLFRVSVSQNEYNNEKRQRITARAVAPVDFASESRLLLEAISGSRFSK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4088092 4091311 + BLOR06733 Blo15g00339 70739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00339 634 PANTHER REPLICATION FACTOR A 1, RFA1 6 628 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo15g00339 634 CDD RPA1_DBD_A 180 283 - -
Blo15g00339 634 Pfam Replication factor-A protein 1, N-terminal domain 10 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo15g00339 634 SUPERFAMILY Nucleic acid-binding proteins 475 628 IPR012340 -
Blo15g00339 634 Pfam Replication factor-A C terminal domain 477 623 IPR013955 -
Blo15g00339 634 Gene3D - 10 116 IPR012340 -
Blo15g00339 634 CDD RPA1_DBD_C 474 628 IPR013955 -
Blo15g00339 634 CDD RPA1_DBD_B 313 419 - -
Blo15g00339 634 Gene3D - 440 629 IPR012340 -
Blo15g00339 634 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Blo15g00339 634 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Blo15g00339 634 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 628 - -
Blo15g00339 634 Gene3D - 177 286 IPR012340 -
Blo15g00339 634 Gene3D - 291 430 IPR012340 -
Blo15g00339 634 SUPERFAMILY Nucleic acid-binding proteins 22 108 IPR012340 -
Blo15g00339 634 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 20 628 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo15g00339 634 Pfam Replication protein A OB domain 309 405 IPR031657 -
Blo15g00339 634 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00339 Blo-Chr15:4088092 Blo16g00969 Blo-Chr16:37955158 2.22E-91 dispersed
Blo15g00339 Blo-Chr15:4088092 Blo06g01214 Blo-Chr6:35741905 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00339 K07466 - qsu:112017680 925.62