Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00342 ATGAGGTGGGAAAGGCTCCTGCTACCCGTTAGACAAGGGCAGGAGGGAGCTCTGCAAGAAGTTGGTGAGATATCCGGGCCAGGAAAGAGGTGGGGTCACTCTTGCAACGCCATTAAAGAAGGAAAATATCTCTATGTCTTTGGAGGTTATGGAAATGAAAATTGTCAAACCAACCTTGTACACTTCTTCGACACTGCTAATCAAAGATGGAGTGAGCCAGAGATAAAAGGCATTCCACCAGTTCCGAGAGACAGTCACACTTGTACAACGGTTGGTGATAATCTTTTTATTTTTGGGGGCACCGATGGGACTAACCCTCTTAAAGATTTGCTTATATTGGACACTTGTTTAAATACATGGGCTTATCCAAGCTTAAGAGGTGAAGGGCCAGAGGCACGAGAGGGTCATAGTGCAGCTCTTGTTGGAAAACGACTCTTTATTTTTGGTGGCTGTGGAAAATCTTCGAATAATGTCGAAGTATACTATAATGATCTTTATATTTTGAATACTGAGACATTTGTATGGAAACGTGCAACTACATCAGGCACTCCACCTTCTCCCCGCCATAGCCATACGTGTTCATCTTGGAAGAATAAAGTCATCGTGATTGGTGGAGAAGATGGACATGATTATTATTTGTCTGATGTTCACATTCTTGATACAGACACTCTAAATTGGATGGAGCTGAGCACTTCTGGACAATTCTTGATGCCTCGAGCTGGTCATACGACTGTTGCCTTTGAAAACCACTTGTTTGTGTTTGGCGGTTTTACAGATGCACAAAACTTATTCAATGATTTGTCCATGCTTGATCTTGATACTGGTATTTGGACTAAGGTCCTAACTTCAGGCGATGGACCCTCTGCCAGATTTTCTGTTGCTGGGGCCTGCTTGGATCCCCAAAAGGGTGGTGTTCTTGCATTCATCGGTGGTTGTAATAGAAGCCTCGAGGCTCTAGACGACATGTATTTCTTAAACACAGGATTTTCCAGAGAAAATGAATGGAGACTCGATAAGTTGTCTCTAAGGAAGCAATTGAAGCTAAAGTGTCAAGAACAAAATCAGAATTTTCTTCGCGATAAAGCTCATGTGAAAATTGGGACTGAGCCAGATATGTACCAGCCAATGCCCGTGCATGCTCATGGTCATCAAAGTGGCCATAATTATCCTTTGAATCAATCCCGCCATCTAAATGGAAAGAAGATGTTTCGAGCAAAGGTCACTGAAAGCATCCTAAATGGATACACCATCGAAACTATCATTGATGGAAGGCCTCTCCATGGAGTATTGTTCGCCAACAAGCCCAACTATATTGACTTTGCCCATCATTCTAGTCGGGCTGCTGGGAATACTGGCAATGTTTTGTTGAATGGGGGTTTCAACTCAAAATCCAAGAGTTCTCGGGTTGTCAAGTTGGATGGTGTAAATGAGAGATTAGTGGACGGTGTCCAAGAAAAGGGCTCTGCGTTAGATGAACATCAGATGAACATCGAGTCTGATCTAGCACCATCTAATGCTTCTCAGCCCCATAAGGTGACTCCAAATACTGATTTGACAATGCCTCCTCCTTCAGAGCCAGATAATATTCAAATGCATGATGCAATGGATTCAAACACTCGATACAAGATTGTGGACAACCAAAACATCTTGCAGGATTCAAAAGGCAATGTTTTGAAAGAGGATTCTCTAGTGGTAGATAATGATACCACTGTTTCAATCCCAAGCCAAGATGAAAGAATGGGTATTCCATGGGACGTCGAATCTGATGACAAAACACAGACAGCTGAAGAACAAGAATTTGCAAAATGA 1809 42.62 MRWERLLLPVRQGQEGALQEVGEISGPGKRWGHSCNAIKEGKYLYVFGGYGNENCQTNLVHFFDTANQRWSEPEIKGIPPVPRDSHTCTTVGDNLFIFGGTDGTNPLKDLLILDTCLNTWAYPSLRGEGPEAREGHSAALVGKRLFIFGGCGKSSNNVEVYYNDLYILNTETFVWKRATTSGTPPSPRHSHTCSSWKNKVIVIGGEDGHDYYLSDVHILDTDTLNWMELSTSGQFLMPRAGHTTVAFENHLFVFGGFTDAQNLFNDLSMLDLDTGIWTKVLTSGDGPSARFSVAGACLDPQKGGVLAFIGGCNRSLEALDDMYFLNTGFSRENEWRLDKLSLRKQLKLKCQEQNQNFLRDKAHVKIGTEPDMYQPMPVHAHGHQSGHNYPLNQSRHLNGKKMFRAKVTESILNGYTIETIIDGRPLHGVLFANKPNYIDFAHHSSRAAGNTGNVLLNGGFNSKSKSSRVVKLDGVNERLVDGVQEKGSALDEHQMNIESDLAPSNASQPHKVTPNTDLTMPPPSEPDNIQMHDAMDSNTRYKIVDNQNILQDSKGNVLKEDSLVVDNDTTVSIPSQDERMGIPWDVESDDKTQTAEEQEFAK 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4162623 4169642 - BLOR06736 Blo15g00342 70742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00342 602 MobiDBLite consensus disorder prediction 500 522 - -
Blo15g00342 602 Pfam Galactose oxidase, central domain 238 288 - -
Blo15g00342 602 Pfam Galactose oxidase, central domain 30 71 - -
Blo15g00342 602 MobiDBLite consensus disorder prediction 582 602 - -
Blo15g00342 602 Pfam Kelch motif 130 173 - -
Blo15g00342 602 MobiDBLite consensus disorder prediction 500 518 - -
Blo15g00342 602 PANTHER KELCH REPEAT DOMAIN 21 445 - -
Blo15g00342 602 SUPERFAMILY Galactose oxidase, central domain 24 258 IPR011043 -
Blo15g00342 602 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 21 445 - -
Blo15g00342 602 Gene3D - 230 386 IPR015915 GO:0005515
Blo15g00342 602 MobiDBLite consensus disorder prediction 569 602 - -
Blo15g00342 602 Pfam Kelch motif 187 230 IPR011498 GO:0005515
Blo15g00342 602 Pfam Kelch motif 82 121 IPR006652 GO:0005515
Blo15g00342 602 Gene3D - 12 229 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00342 - - - qsu:111998399 747.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00235 Blo-Chr15:2473698 Blo15g00342 Blo-Chr15:4162623 1.45E-09 dispersed
Blo15g00342 Blo-Chr15:4162623 Blo17g00666 Blo-Chr17:16786129 2.07E-25 dispersed
Blo15g00342 Blo-Chr15:4162623 Blo06g01210 Blo-Chr6:35666444 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00342 Blo_Chr15 FPKM 7.686224 6.701828 13.063772 12.290831 8.013425 14.111799 9.196907 10.532727 10.855234 12.127999