Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00344 ATGGCGGAGTGCGATAAAGACATTAAGGTTCGAACCATAACTGGCGAGTCATTTGTTGTATCGATTTCCGGGGACAAAACAGTTGATGACCTGAAGCTTCTTCTCAAGCAGAATTTTCCTCCCGCGACTAACTCTCCCAGCTTCCAGCTCTTCTTTAAGGGCAGAAAATTGAGACCTCATAGTCTGATAAATTCGCATTGCATTGAGCATGATGAATTTCTGGTTTTCGTTCCATTCACTAAGAAGGAGAGTCCTCAGATACAGCTGTCAGATGAACCTAAAAGCTCTTTCGTTGTCGCTGACAGAAGCTCAATATCGAAATTTGCTGATATGGCTTGGTCTGAAATGATTGAGGATTTATCTTATTTTGACTATGGAAGTAATAAAAATCTTTCTGATTCTAATTTAGAGTGTTCGGACGTTGGAAATAAACGGGATATGCCTGCATCTACGTCTAGTTCTTGTTGTTTTGAGGATAAATCAAAGCGGAAAAGAAGTTTCAAATTTGATAAACTGAATGGAAGTTTGGGTGATCATGTGATGAATATTTTGTGTTCTCCAATCGAAGGTGTTTTCGATGAAAATACGCAGGAAAAGTTTGTTATGTATCTGGAGAATGTGAATTGTTTATCAAACTCCCTGGATGGGAAGTGCAAGTTGTTGAGAAAAGCCAAATTATTAGATCTTAGCTTGCCACTTGATGGAACTGTTTCTAATTCCTGCTTTTGTCCAGGATGGTTGAAATTAAAAATGAAGGCTTTTGCTTTCTTGAATATTTTTTCTGCATTTCTTCAACTGCGGCAGGAACACACAACACTGAGTCGATTGGAGGAAGCATTACAACAATTAAAGTTAGCTGGAGTGAACCTCAGTAGTGAGGATATAAAGGACCTCTCTCTTCTTTGTCCAAAGGTAGTACTTTTAGTGAGTTTCAAAATGGAGGAAATGTATTCTGACGACAAACTTGTAATTTTTGACCTATTACCAACTCCAAAATATCCTGTAGAAGATACTACAAATGCTTGCAAACAGATGAATTCATCAAATATTATCAGGGCATGGGAGAGGAGAGAGAGATATTTCAAAACTAATTTGTTGGAGGCTGTTGATTTCTTGTTTGCCCCTAATATTTTACTAGTATTTCTTGAGCGCATTATACTGTATTTATTTACTCCAAGTAATCAGTCTTGTATTTATGCAATAACTAGATATTTCATGCAGTGCAAAAATAGGAATGAGCTAGCTGCTCCGTTTTGCTTGAGAGACTTAATAAAATCAGCAAAGGAGTCTGGTGCCGATGCTTGTAAAAATGAAGGAAAACGAGCAAGGCAAAGTGACTCAAATTCTCATTTGGGTCCAACCTGCTGTCACGATAGGGAAAAATTACTTCCAGAGGAAATGGTTGAACATCTTAGAAAGGGTGCTGGATCTGATGGACAGATTGTGCATATTGAAGATATTAGTGCTAGGGCTGCCATTCATGTGGAAATCCCAAACGAACTATCAGTTGACCTTAGATCTGCACTCAAATGTATTGGAATCACAAAATTGTACTGTCACCAGGCAGAATCTATACAAGTCTCACTTTTTGGAAGGAATGTTGCAGTTGCAACAACGACATCAAGCGGAAAATCTTTATGCTACAATTTGCCAGTTTTAGAAGTCATGTCTCGGAATTCATTATCATGTGCTTTTTACTTATTTCCAACGAAGGCCTTGGCACAAGATCAACTAAGAGCTTTGTTAGTCATGCAAGAAGGATTTGGTGCATCTATAAATGTTGGTGTATATGACGGTGACACTTCTTGTGATCAAAGGAGTTGGTTGCGGGACAATGCTAGAATTTTGATCACAAATCCAGATATGTTGCACATATCAATTTTGCCCTTTCATAGACAGTTTAGGCGGATTTTATCAAATCTAAGATTTGTGGTAATTGATGAAGCTCATAGTTACAACGGAGCTTTTGGATGTCATACTACTCTTATATTAAGGAGACTTCGCCGACTCTGTTCTCATGAGTTGATTCAGAATGATGGAAGTCCTTCTGCGAGAAAACTATTTATCCTTTGGAATCCTATCATGCATATGACAAATAAGTCACTTGAATGCCTAATAGTTGTTCATTTCTCCAGCCCAATTTTGGATGTTTCACGGCTTCTTGCAGAAATGGTTCAGCATGGACTTCGAAGCATTGCATTCTGTAAAACGCGTAAACTTTGTGAACTTGTTTTGTCCTATACGTGTAAGATTCTTCAGGAGACAGCACCCACTATGGTTCAGTCAGTTTGTGCCTATCGTGGTGGATACACTGCTGAGGACAGGAGAAAAATAGAGAGAGATTTTTTTGGAGGGAAGCTTTGTGGTATTGCTGCAACAAATGCTCTTGAGTTGGGTATTGATGTTGGACACATTGATGTCACACTGCATTTGGGTTTTCCTGGTAGCATTGCTAGCCTGTGGCAGCAAGCGGGAAGGGCAGGAAGGAGAAAGAAGACTTCTCTTTCAGTTTATGTTGCCTTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCACAAAAACTCTTTGGGAGCCCAAATGAATGTTGTCATATTAGTTCTCAAAACCAGCAGGTTCTTGAACAGCACTTGACTTGTGCTGCTTATGAGCACCCATTAAGTTTAATTCACGACGAGCATTATTTTGGTTCTGGTCTTCAAAATGCCATAATTTCACTTAAAAATGAAGGGTACTTGAATTCCAATCCACCTTGCGATTCTTATGGTAGCATATGGAACTATATTGGACACGAGAAAAATCCATCTCATTTAGTTAGCATACGAGCAATAGAAAGTGAGAGATACAAAGTTGTAGACCAGCAACGAAACAAAGTTCTTGAAGAAATAGAGGAAAGCAAGGCTTTTTTTCAGGTATATGAAGGTGCTGTGTATATGAATCAAGGGAAAACTTATCTCATCAAATCCTTGGATTTGTCATCTAAAATTGCTTTCTGTGAAGAGGCTGATATGAAGTATTACACAAAAACTCGTGATTACACCGATATTCATGTGATTGGCGGTAACATGGCCTATCCAAGAAGAGTATCAAACATTCAGTTGTCAAAAACAACTGCCCAAGCTGATGATTGCGTAGTGACAACTACATGGTTTGGCTTCTATCGTGTATGGAAAGGAAGCAACAGAATATTTGATTCGGTTGATCTTTCACTTCCGAAATATTCTTATGAGTCAAAGGCGGTTTGGATTCCTGTTCCACAATCGATAAAAGAAGAGGTGAAGAGAAAAAACATTGATTTTCGTGCCGGATTGCATGCTGCTTCCCACGCTCTTCTTAACATTGTACCTTTACGTGTTATATGCAACTTATCGGACTTGACTGCAGAATGTGCAAATCCTAATGATACTCGCTATTTTCCTGAAAGAATTTTATTGTATGATCGGCGACCCGGAGGAACTGGTATATCAGTACAGGTTCAACCCGTTTTCATGGAGCTGTTGGCCTCTGCTTTGGAACTTCTCATGACTTGTCGCTGCTTAGGAGATGCCGGATGTCCATACTGCATCCAAAGTCTTGCTTGTCGTGAATATAACGAAGTCTTACACAAAGATGCTGCTATTTTAATCATTAAGGGGGTTCTGGATGCAGAGAAAGCATTCTTTGAAGGAGATGGCTGA 3678 39.12 MAECDKDIKVRTITGESFVVSISGDKTVDDLKLLLKQNFPPATNSPSFQLFFKGRKLRPHSLINSHCIEHDEFLVFVPFTKKESPQIQLSDEPKSSFVVADRSSISKFADMAWSEMIEDLSYFDYGSNKNLSDSNLECSDVGNKRDMPASTSSSCCFEDKSKRKRSFKFDKLNGSLGDHVMNILCSPIEGVFDENTQEKFVMYLENVNCLSNSLDGKCKLLRKAKLLDLSLPLDGTVSNSCFCPGWLKLKMKAFAFLNIFSAFLQLRQEHTTLSRLEEALQQLKLAGVNLSSEDIKDLSLLCPKVVLLVSFKMEEMYSDDKLVIFDLLPTPKYPVEDTTNACKQMNSSNIIRAWERRERYFKTNLLEAVDFLFAPNILLVFLERIILYLFTPSNQSCIYAITRYFMQCKNRNELAAPFCLRDLIKSAKESGADACKNEGKRARQSDSNSHLGPTCCHDREKLLPEEMVEHLRKGAGSDGQIVHIEDISARAAIHVEIPNELSVDLRSALKCIGITKLYCHQAESIQVSLFGRNVAVATTTSSGKSLCYNLPVLEVMSRNSLSCAFYLFPTKALAQDQLRALLVMQEGFGASINVGVYDGDTSCDQRSWLRDNARILITNPDMLHISILPFHRQFRRILSNLRFVVIDEAHSYNGAFGCHTTLILRRLRRLCSHELIQNDGSPSARKLFILWNPIMHMTNKSLECLIVVHFSSPILDVSRLLAEMVQHGLRSIAFCKTRKLCELVLSYTCKILQETAPTMVQSVCAYRGGYTAEDRRKIERDFFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRAGRRKKTSLSVYVAFEGPLDQYFMKHPQKLFGSPNECCHISSQNQQVLEQHLTCAAYEHPLSLIHDEHYFGSGLQNAIISLKNEGYLNSNPPCDSYGSIWNYIGHEKNPSHLVSIRAIESERYKVVDQQRNKVLEEIEESKAFFQVYEGAVYMNQGKTYLIKSLDLSSKIAFCEEADMKYYTKTRDYTDIHVIGGNMAYPRRVSNIQLSKTTAQADDCVVTTTWFGFYRVWKGSNRIFDSVDLSLPKYSYESKAVWIPVPQSIKEEVKRKNIDFRAGLHAASHALLNIVPLRVICNLSDLTAECANPNDTRYFPERILLYDRRPGGTGISVQVQPVFMELLASALELLMTCRCLGDAGCPYCIQSLACREYNEVLHKDAAILIIKGVLDAEKAFFEGDG 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4269935 4286276 + BLOR06738 Blo15g00344 70744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00344 1225 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515
Blo15g00344 1225 SMART ultradead3 513 718 IPR014001 -
Blo15g00344 1225 CDD Ubl_ubiquitin_like 8 71 - -
Blo15g00344 1225 SUPERFAMILY Ubiquitin-like 8 78 IPR029071 -
Blo15g00344 1225 Coils Coil 266 293 - -
Blo15g00344 1225 Pfam Helicase conserved C-terminal domain 719 830 IPR001650 -
Blo15g00344 1225 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1222 - -
Blo15g00344 1225 Pfam MrfA Zn-binding domain 1107 1189 IPR018973 -
Blo15g00344 1225 SMART helicmild6 753 831 IPR001650 -
Blo15g00344 1225 CDD SF2_C_Hrq 688 840 - -
Blo15g00344 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 664 IPR014001 -
Blo15g00344 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 716 872 IPR001650 -
Blo15g00344 1225 Pfam DEAD/DEAH box helicase 520 672 IPR011545 GO:0003676|GO:0005524
Blo15g00344 1225 Gene3D - 494 689 IPR027417 -
Blo15g00344 1225 Gene3D - 707 882 IPR027417 -
Blo15g00344 1225 CDD DEXHc_Hrq1-like 517 659 - -
Blo15g00344 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 837 IPR027417 -
Blo15g00344 1225 Gene3D - 7 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00344 - - - bhj:120070581 1446.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00344 Blo-Chr15:4269935 Blo18g00679 Blo-Chr18:13692999 1.00E-09 dispersed
Blo15g00344 Blo-Chr15:4269935 Blo03g00754 Blo-Chr3:31712661 3.01E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00344 Blo_Chr15 FPKM 1.315217 2.057983 24.830355 26.075569 518.509644 426.978333 518.634888 17.044903 16.848495 15.086741