Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00353 ATGAGAACCGACCAGAACCAATATAACATTGAGGCGACGAGGGCATCTCCTTCAAATCATATTAGCTGCGCCTCTCTGTTCTTCCTCTCTCATTCGTGTTTTGTTCTCGCTCGGACGCCGATTGCCTCGCCTCACCAAATGCCAATCGCCAGTCGCCTCACCTCGCCAGACACTAGTCGCCTCGTGTTCTCGCCTCATCAGACGCCAGTCACCTCGCCAGACGCCAGTCCATTCTCTGTTCTTGCCTACCCCTGTTCTTGCTCTTCCCCTTCTGGTCTTGCTTTCTTAATTTCCAGTGCTCAACATGGCTGCATTGACTGTTTGGCATTGATGACTACGGAAAAAGCGATTATTAGGAAAGAAAAGCATTTAGATGAAGAAGCAAGTGAAGATGAAGAGGTTATATACAAGATTGAAGTCCCCGCCAATAGATATGATTTGCTTTGCCTTGAAGGGCTTGCTCAAGCGCTCCGTGTTTTCAATCACTGGGAGGAGATACCCAGATACACGCTGGCCAATATCAGTAAACAGTCAATGCATAAAATGCATGTGAAACCAGAGACTGCTTCAATTCGCCCATACGTTGTATGTGCTATTTTAAAGGGTATAACTTTTGATGAAGCAACGTATAACAGCTTCATTGATCTCCAAGATAAACTCCATCAGAACATTTGCCGGCGGAGAACCCTTGTTGCTATTGGAACCCATGATTTGGACACACTAGAAGGCCCTTTCACTTATGAGGCTTTGCCGCCAACAGACATAAATTTTGTGCCACTAAAACAGGTGAAAAACTTTAGAGCTGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAGCTGAAGAAGTTCTTACACATAATTGAGGATTCCCCTGTATTCCCAGTGCTGTTTGATCGCAACAGGACGGTCTTGTCTTTACCACCAATAATTAATGGTGCACATTCAGCAATCACTCTAAACACAAAGAATGTGTTTATTGAATGCACTGCAACTGATTTGACCAAGGCAAAAATTGTCTTGAATACAATGGTAACAATGTTTTCAGGCTGCTGTGAAAGGAAGTTCGAAATTGTTCCAGTTGAAGTTCTAGATTCTGATGGGAAGTCAAGTATCTATCCAGATTTGTCTATTTACAATATGGAAGTTTCTTTATCATATATTACGGGTTCTATTGGAGTATCTTTGGAAGCAGAAGAGGTTACAGGTTTGTTGAATCGAATGCAATTGCAAGCAGAAAACTCAATGTCAGGTGATGGCTACAAGATTACTGTATCTGTTCCACCAACCAGGAGTGACGTCCTTCATGCATGTGATGTTATGGAGGATGTTGCCATTGCATATGGATTCAATAACATTCCAAAGAGAAAGCTTGCATCGGTGAATCCATTACCATTAAATGAGTTTAGTGATCTTATTAGATTGGAGATTGCAGCAAATGGGTTCACAGAGGTGTTGACATGGATTCTCTGCTCGTATAAGGAGAATTTTGCAATGTTAAACCGCAAAGATGACAAATCAACTGCCGTGATTATTGGAAATCCTCGTTCGACAGATTTTGAGGTAGTACGAACCAGCCTTATGCCTGGGATTTTGAAAACGGTTGGCCATAACAAAGATCATCCAAAGCCCATAAAGATCTTTGAAGTGGGTGATATTACACTTCTGGATGAGAAGAAAGATGTTGGTGCAAAAAACTACCGCCATCTTTCAGCATTATATTGCAGTGCTAATTCGGGATTTGAGCTGATTCATGGGTTGGTCGATAGAATTATGGAAGTAATAGGGGCTCCTTTTGTTCCAACCGGTGACAATTCAGGGTACTACATCAAATGTGCAGATGAGCCTGAATTTCTTTCTGGAAGGCAAGCTAGCATCATTTACAAAGGAAAGCGGGTTGGCACCTTTGGTATTGTGCATCCTGAGATGTGGATGCCTAGCTCGAGGCAAGCGTTCTTCCTCTCCTCTCTCTCTTCTTCATTTTCTTCAATCTTTTTTCTCTTCCTCTTCCTCCTCTCCCCCGTTTTCTCTGCAAACGTAAACACGTCAGCTCGATCATGTAAAACTCACAACAAACCCATGAAACCAGAGAGGGAGGAGGAGGAATGGGCAAAGTTACTTCTTCAATGGCCGCAAAATTCTCCTTTTTCCCCCCCCAACCCACCTTCGTACAAAGTTGTGAAAGACCAAGCCACTGGTTTATTGCTGTTGGACCCGATTTTGCACCGGGAAAACGTCGACGTCTTGAAGATTCCCACTCGCCGGGGGACCCAGATCGTGGCCGTGTATGTCCGGTATCGGATGGCGACATCTACCCTTCTCTATTCCCATGGTAATGCTGCTGATATTGGCCAGATGTACGAGCTTTTCCTTGAGCTCAGCATTCACTTGCAGGCCATTTTTTGCCTGGACACCGCAGTCTCCAAGCCATTTTTGCCTGGACACCGCGGTCTCCAGGCCATTTTGCCTGGAGACTGCGGTCTCCAGGCCATTTTGGCTGGAGACTGCGGTCTCCAGGCCATTTTTGCCAGGCCATTTTTGCCTGGAGACCGAGCCATTTTTTGGCTGGAGACCGCGGTCTCCAGGCAATTTTTGCTGGAGACTGCGGTCTCCAGGCTATTTTTGGCTGGAGACCGCGGTCTCCAGGCAAAACGACCTTTTGAACTTCAAACGACCATAACTTTTGCTACGAGTGTCAGAATTGGACGCATAAGCACTGAAGACTCCGGTCTCCAGGCAAAACGACCTCTTGAACTTCAAACGACCATAACTTTTGCTACGAGTGTCAGAATTGGACGCATAAGACTGCCTGTGAAGCTAAAGCTGGGGAGGCGCAACCTTTGGTCCCGGAAGGCTAAGATTGCACCTCACCTATGGGTGACAAAAAGCCGAAAAACCCTTTTCGCTCTTGATATATTGAAGAATTTTGCACTCATAGGAGCTCAACTAATTTCAGACAGCATAAGATCATAA 2973 44.94 MRTDQNQYNIEATRASPSNHISCASLFFLSHSCFVLARTPIASPHQMPIASRLTSPDTSRLVFSPHQTPVTSPDASPFSVLAYPCSCSSPSGLAFLISSAQHGCIDCLALMTTEKAIIRKEKHLDEEASEDEEVIYKIEVPANRYDLLCLEGLAQALRVFNHWEEIPRYTLANISKQSMHKMHVKPETASIRPYVVCAILKGITFDEATYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPTDINFVPLKQVKNFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLFDRNRTVLSLPPIINGAHSAITLNTKNVFIECTATDLTKAKIVLNTMVTMFSGCCERKFEIVPVEVLDSDGKSSIYPDLSIYNMEVSLSYITGSIGVSLEAEEVTGLLNRMQLQAENSMSGDGYKITVSVPPTRSDVLHACDVMEDVAIAYGFNNIPKRKLASVNPLPLNEFSDLIRLEIAANGFTEVLTWILCSYKENFAMLNRKDDKSTAVIIGNPRSTDFEVVRTSLMPGILKTVGHNKDHPKPIKIFEVGDITLLDEKKDVGAKNYRHLSALYCSANSGFELIHGLVDRIMEVIGAPFVPTGDNSGYYIKCADEPEFLSGRQASIIYKGKRVGTFGIVHPEMWMPSSRQAFFLSSLSSSFSSIFFLFLFLLSPVFSANVNTSARSCKTHNKPMKPEREEEEWAKLLLQWPQNSPFSPPNPPSYKVVKDQATGLLLLDPILHRENVDVLKIPTRRGTQIVAVYVRYRMATSTLLYSHGNAADIGQMYELFLELSIHLQAIFCLDTAVSKPFLPGHRGLQAILPGDCGLQAILAGDCGLQAIFARPFLPGDRAIFWLETAVSRQFLLETAVSRLFLAGDRGLQAKRPFELQTTITFATSVRIGRISTEDSGLQAKRPLELQTTITFATSVRIGRIRLPVKLKLGRRNLWSRKAKIAPHLWVTKSRKTLFALDILKNFALIGAQLISDSIRS 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4473969 4498389 + BLOR06747 Blo15g00353 70753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00353 990 Gene3D - 379 453 - -
Blo15g00353 990 SMART B5_2 378 450 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Blo15g00353 990 CDD PheRS_beta_core 465 642 IPR041616 -
Blo15g00353 990 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 453 643 IPR041616 -
Blo15g00353 990 SUPERFAMILY Putative DNA-binding domain 380 454 IPR009061 -
Blo15g00353 990 SUPERFAMILY Class II aaRS and biotin synthetases 447 644 IPR045864 -
Blo15g00353 990 Pfam Phe-tRNA synthetase beta subunit B1 domain 120 161 IPR040659 -
Blo15g00353 990 SMART B3_4_2 191 353 IPR005146 GO:0003723|GO:0004826
Blo15g00353 990 Pfam tRNA synthetase B5 domain 381 450 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Blo15g00353 990 Gene3D - 172 377 IPR020825 -
Blo15g00353 990 ProSiteProfiles B5 domain profile. 376 455 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Blo15g00353 990 Gene3D - 106 162 - -
Blo15g00353 990 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 110 643 - -
Blo15g00353 990 Gene3D Bira Bifunctional Protein; Domain 2 464 645 IPR045864 -
Blo15g00353 990 Pfam B3/4 domain 192 352 IPR005146 GO:0003723|GO:0004826
Blo15g00353 990 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 110 643 IPR045060 GO:0004826|GO:0006432
Blo15g00353 990 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 126 644 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00353 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 897.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00353 Blo-Chr15:4473969 Blo16g01073 Blo-Chr16:39280455 1.36E-21 dispersed
Blo15g00353 Blo-Chr15:4473969 Blo15g00726 Blo-Chr15:24071720 3.41E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00353 Blo_Chr15 FPKM 12.417127 14.940311 17.225039 15.587152 14.167196 18.769688 18.743483 17.654795 19.940189 18.547552