Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00365 ATGAGAAAGTGGCGTGGGAGGTCAGTAATGAAATGTAGGAGAGATGAGCGTGTAACCCACGCGCCAATTCACCGAGACCCCGCCACTGGGTTTCCCGCCATCAGTAATCGTGTGTATGCCAGGCAAGCTCAAGGGTTTCTTTCATTCTTCAAAACCCTACCATCTGATTACTACACTGCTCATGGAGATAACGCAACATTCATTGCAAAGACATACTACCATACTACTACTGCTTTACGACAACTTGGTAGTGGATCTGATGGGCTGTCTAGTGTGAGCATCAGTAAAAATATGTTTGAGTCAATTGCTCGTGATATCCTTCTAGAGAGAACAGATCATACCATCGAGCTTTATGAGGGAAGTGGCTCAAATTGGAGACTGATCAAGAGTGGCACTCCTGGGAATCTTGGTAGTTTTGAGGACATTTTGTTTGCAAACAATGAGATGCAGGAAACCCCTGTTGTTGCTTCTTTATTTCCTAACTTCCGAGAAAATGGATTTACTATTGGATTAGGATATCTTGATCTAACTAATAGACTACTGGGTTTGGCTGAATTTCCTGATGATAGCCACTTTACAAATGTAGAGTCAGCCTTGGTTGGTCTAGGTTGCAAGGAGTGTTTGTTGCCTCTAGAAAGTGGCAAGTCCAGTGAAAATAAGGCTTTACATGAGACATTAACTAGATGTAGTGTCATGTTAACAGAGAGGAAAAAAACAGAGTTCAAAATGAGAGATTTAATGCAGGACCTTGCTAGGCTTGTCAAAGGTTCAGTCGAACCAGTGAAGGATTTGGTGTGCGGGTTTGAGTTTGCACCTGGAGCTTTAGGGGCATTGATATCATATGCAGATTTACTTGCAGATGAGAGCAATTATGGAAATTATAGTATCATGAGATACAATCTTGATAGTGTGATGAGGTTAGACACTGCTGCCATGAGGGCACTAAACATCCTGGAAAGCAAAACTGATGCAAACAAGAATTTCAGTTTGTTTGGTCTCCTGAATCGAACATGTACTGCTGGAATGGGAAAACGACTACTGCACAAGTGGCTAAAACAGCCTTTGCTGGATGTGAAAGAAATTAATTGCAGGCTTGATTTGGTTCAGGCTTTTGTGGAGGATGCTTCTCTCCGGAAAAATCTGAGACAACATCTCAAAAGAATTTCAGATTTTGAGCGATTATCACAGAGTCTTGAAAAAAAAAGAGCTGGTTTGCAGCATGTTGTTAAACTTTATCAGTCTTCAAGTATCAGACTTCCGTACATAAAAAGTGCTATGGATCAATATGATGGACAATTTTCCTCTCTGATCAAGGAAAGGTATTTGGATTCTCTTGATTTCTGGACAGACGAGGAGCACCTGAGCAAGTTCATCTGCCTTGTTGAAACTTCAGTAGACCTTGAACAACTTGAGAATGGTGAATATATGATCTCATCAAGTTATGATTCCGCATTGTCTGAGTTAAAGAATGAGCAAGAGTCATTGGAGCGTCAAATACACAATTTGCATAAACAAACTGCCAATGATCTTGATCTGGTTATAGATAAAGCATTAAAGTTAGATAAAGGCACACAATTTGGACATGTTTTCAGAATAACAAAGAAGGAAGAACCAAAAATAAGGAAAAAGCTCTCTTCCCAATTTATTGTGCTTGAAACTAGAAAAGATGGAGTGAAATTTACAAATACAAAGCTTAAAAAGTTGGGAGACCAGTATCAAAAGAAACTAGAGGAGTATAAGCAATTCCAGAGAGAGCTTGTTACCCGAGTTGTTCAAACTGCAGCAACCTTCTCTGAGGTATTTGGATTGGTAGCTGGGATGCTTTCAGAGTTGGACGTTTTACTCAGTTTTGCTGATTTGGCCTCTTGTTCTCCTAATCCTTACACCAGACCACAAATCACTTCCTCGGACCAGGGAGATATTGTATTAGAAGGGAGTAGACACCCATGTGTGGAGGCTCAGGACTGGGTTAACTTTATACCAAATGATTGTAAGCTTGTGAGGGGTGAAAGTTGGTTTCAGATTATTACTGGTCCCAACATGGGAGGAAAATCAACATTTATTAGACAGGTTGGAGTGAATATTTTGATGGCACAAGTGGGTTGTTTTGTTCCTTGTGATAAAGCCAGTATATCTGTACGTGATTGCATTTTTGCTCGTGTAGGTGCTGGGGACTGCCAATTGCGCGGCATTTCTACATTTATGCAAGAGATGCTTGAAACTGCATCTATATTGAAAGGAGCTACTGATAAGTCGTTGATAATAATTGATGAGTTGGGCCGTGGTACATCGACTTATGATGGATTTGGCTTAGCATGGGCCATTTGTGAGCATATTGTCGAAGAGATCAAAGCTCCTACTTTGTTTGCAACTCACTTTCATGAACTGACAGCATTAGCTCATCAAAATGATAATGTGCCTGATCCACAACATATTATTGGCGTGGCAAACTATCATGTTAGTGCGCACATAGACTCCTCAAGTCGCAAACTAACCATGTTGTACAAGAATCTAATTATCCCAAGGGAAATCGGATGCCATTTCATAAATATTTTGAAGAATTTTGAAACATTCCCCAGATTAGGAACTGTTCAAGGGAAATATTTTATTTTTCTGGTTGGTCGAGTTGATGTTGTATCTTTGAAGAAAATTGGGTTGCAAATGCTTGTTGAACCAGGGCCTTGCGATCAAAGTTTTGGCATCCATGTGGCAGAGTTTGCCAATTTTCCAGCTAGTGTGGTGGCCCTTGCCAGAGAGAAGGCTGCTGAATTGGAAGATTTTTCACCGGAGGCATCCATTTTAAATGATGTTAAAGAAGAGGTGGGTTCCAAACGAAAAAGAGAAACAGGGTCGGATGATGTATCAAAAGGCATGGCTCGGGCTCGCCAATTTCTGAAATGTTTTGCTGATTTGCCATTGGATAAGATGGGTATGAAGGAGGCCTTGGAGAAGGTTGTCAAATTGAAAAATGAGTTGAAGAAAGATGCAGCTGACTCTCATTGGCTTCAGCAATTCCTGTAG 3021 40.68 MRKWRGRSVMKCRRDERVTHAPIHRDPATGFPAISNRVYARQAQGFLSFFKTLPSDYYTAHGDNATFIAKTYYHTTTALRQLGSGSDGLSSVSISKNMFESIARDILLERTDHTIELYEGSGSNWRLIKSGTPGNLGSFEDILFANNEMQETPVVASLFPNFRENGFTIGLGYLDLTNRLLGLAEFPDDSHFTNVESALVGLGCKECLLPLESGKSSENKALHETLTRCSVMLTERKKTEFKMRDLMQDLARLVKGSVEPVKDLVCGFEFAPGALGALISYADLLADESNYGNYSIMRYNLDSVMRLDTAAMRALNILESKTDANKNFSLFGLLNRTCTAGMGKRLLHKWLKQPLLDVKEINCRLDLVQAFVEDASLRKNLRQHLKRISDFERLSQSLEKKRAGLQHVVKLYQSSSIRLPYIKSAMDQYDGQFSSLIKERYLDSLDFWTDEEHLSKFICLVETSVDLEQLENGEYMISSSYDSALSELKNEQESLERQIHNLHKQTANDLDLVIDKALKLDKGTQFGHVFRITKKEEPKIRKKLSSQFIVLETRKDGVKFTNTKLKKLGDQYQKKLEEYKQFQRELVTRVVQTAATFSEVFGLVAGMLSELDVLLSFADLASCSPNPYTRPQITSSDQGDIVLEGSRHPCVEAQDWVNFIPNDCKLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGISTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTALAHQNDNVPDPQHIIGVANYHVSAHIDSSSRKLTMLYKNLIIPREIGCHFINILKNFETFPRLGTVQGKYFIFLVGRVDVVSLKKIGLQMLVEPGPCDQSFGIHVAEFANFPASVVALAREKAAELEDFSPEASILNDVKEEVGSKRKRETGSDDVSKGMARARQFLKCFADLPLDKMGMKEALEKVVKLKNELKKDAADSHWLQQFL 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4847530 4853849 + BLOR06759 Blo15g00365 70765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00365 1006 Coils Coil 978 998 - -
Blo15g00365 1006 Gene3D MutS, connector domain 133 302 IPR036678 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 51 991 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Blo15g00365 1006 SMART mutATP5 671 922 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Gene3D DNA repair protein MutS, domain I 27 132 IPR016151 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Gene3D - 536 628 - -
Blo15g00365 1006 Gene3D - 305 535 - -
Blo15g00365 1006 SUPERFAMILY DNA repair protein MutS, domain III 308 622 IPR036187 -
Blo15g00365 1006 SMART DNAend 325 654 IPR007696 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Coils Coil 565 585 - -
Blo15g00365 1006 CDD ABC_MSH2_euk 642 925 - -
Blo15g00365 1006 Gene3D - 629 1004 IPR027417 -
Blo15g00365 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 818 IPR027417 -
Blo15g00365 1006 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 51 991 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Blo15g00365 1006 Pfam MutS domain II 164 294 IPR007860 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 ProSitePatterns DNA mismatch repair proteins mutS family signature. 752 768 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Pfam MutS domain III 311 618 IPR007696 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Coils Coil 381 401 - -
Blo15g00365 1006 Pfam MutS domain V 674 836 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Pfam MutS domain I 55 139 IPR007695 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 PIRSF MSH2 871 1006 IPR011184 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 PIRSF MSH2 32 838 IPR011184 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Pfam MutS family domain IV 481 574 IPR007861 GO:0005524|GO:0006298|GO:0030983
Blo15g00365 1006 Coils Coil 478 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00365 K08735 MSH2; DNA mismatch repair protein MSH2 - qsu:112024698 1489.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00899 Blo-Chr7:27868387 Blo15g00365 Blo-Chr15:4847530 1.68E-07 dispersed
Blo08g00283 Blo-Chr8:3834087 Blo15g00365 Blo-Chr15:4847530 7.53E-06 dispersed
Blo15g00365 Blo-Chr15:4847530 Blo17g00613 Blo-Chr17:12452732 5.25E-13 dispersed
Blo15g00365 Blo-Chr15:4847530 Blo09g00106 Blo-Chr9:1980361 3.63E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g364 . . Bda06g00491 . . . . Bma12g00941 . . Cma10g00249 . Car10g00237 . . . . . . . . . . . Cla06g01486 Cam06g1640 Cec06g1700 Cco06g1698 Clacu06g1606 Cmu06g1555 Cre06g2367 . . . Cone19ag0263 . . . . . Blo15g00365 . . Bpe07g00731 . . . . Cmo10g00269 . . . . . . Cpe18g00743 . . . . . . . . . . . . . . Lsi06g01348 Csa01g00363 Chy02g02380 Cme02g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00365 Blo_Chr15 FPKM 0.797527 0.0 0.0 1.291937 0.0 0.0 0.0 1.62729 2.220888 1.658086