Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00372 ATGGATCTCTGTTCTTGGTTCTCCCCCACGCTTATTCTTACGCTCTTGATTGCCTTGTTTATTGCTTCCAGAGGTGTATCGGCTTCCACATTTACTTTTGTAAACAGGTGTGAGTACACGGTTTGGCCCGGCATTCTTGCAAATGTAGGCAGTCCCCAGCTTGACAGTACCGGATTTGAGCTCCCAAAAGATACCTCTCGCTCTTTTTTAGCTCCAACGGGCTGGTCTGGCAGATTCTGGGGTCGCACTGGTTGTAACTTCGATGGATCCGGATCCGGATCCGGTTCTTGTCTCACTGGAGACTGTGGTTCGGGAAAACTCGAGTGCAAGGGCGCCGGAGCAGCTCCTCCTGCCACGCTGGCCGAGTTCACGCTTGGAACGGTTGGAAAAGACTTCTATGACGTCAGCCTCGTCGACGGCTACAATCTTCCCATGATTGTCGAAGGAACGGGTGGGACAGGTACGTGCGCTTCGACGGGGTGTTCCACCGACTTGAACCTGCAATGCCCCGCGGAACTGAGAGTCGGGGAGGGAGACGCCTGCAAGAGCGCGTGTGAGGCGTTTGGTAGCCCGGAGTACTGTTGCAGCGGCGCGTACGGTTCACCCACCACTTGTAAACCTTCTGTTTACTCGGAGATGTTCAAATCTGCTTGCCCAAAATCATATAGCTACGCTTATGACGATGCTAGCAGTACTTTTACTTGCACCGGGGCTGATTACACCATCACATTTTGTCCATCATCTCCTAGTCAGAAGTCTTCAAGCTTTTCCACTCCAATGACGGCGTTTGGTTTACCAGGATCTAATTCCGTGACGTTAGGAACAGGGTCGGAGCCCGACCTTGGGTACTCTGGTACAGGATCCGGGGAAGCAGTGCTGGAAGATGGGTCATGGTTAGCTGGTTTAGCCATGGGAGATTCTCACAGTACTGCCCTGTCGCCAACTTTAAAGACGGGTTTCACTATCTTGTCGGCCATCTTCTTCTCTCTTTACTTGTAG 999 52.25 MDLCSWFSPTLILTLLIALFIASRGVSASTFTFVNRCEYTVWPGILANVGSPQLDSTGFELPKDTSRSFLAPTGWSGRFWGRTGCNFDGSGSGSGSCLTGDCGSGKLECKGAGAAPPATLAEFTLGTVGKDFYDVSLVDGYNLPMIVEGTGGTGTCASTGCSTDLNLQCPAELRVGEGDACKSACEAFGSPEYCCSGAYGSPTTCKPSVYSEMFKSACPKSYSYAYDDASSTFTCTGADYTITFCPSSPSQKSSSFSTPMTAFGLPGSNSVTLGTGSEPDLGYSGTGSGEAVLEDGSWLAGLAMGDSHSTALSPTLKTGFTILSAIFFSLYL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5196858 5198225 + BLOR06766 Blo15g00372 70772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00372 332 SMART tha2 31 246 IPR001938 -
Blo15g00372 332 CDD TLP-PA 30 245 - -
Blo15g00372 332 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 13 268 - -
Blo15g00372 332 Gene3D Thaumatin 29 246 IPR037176 -
Blo15g00372 332 ProSiteProfiles Thaumatin family profile. 28 246 IPR001938 -
Blo15g00372 332 PANTHER OS03G0233200 PROTEIN 13 268 IPR001938 -
Blo15g00372 332 Pfam Thaumatin family 35 246 IPR001938 -
Blo15g00372 332 SUPERFAMILY Osmotin, thaumatin-like protein 30 247 IPR037176 -
Blo15g00372 332 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Blo15g00372 332 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Blo15g00372 332 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Blo15g00372 332 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Blo15g00372 332 ProSitePatterns Thaumatin family signature. 93 109 IPR017949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00372 - - - zju:107427521 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00849 Blo-Chr4:9311617 Blo15g00372 Blo-Chr15:5196858 6.16E-82 dispersed
Blo15g00372 Blo-Chr15:5196858 Blo16g00082 Blo-Chr16:2209602 6.88E-121 dispersed
Blo15g00372 Blo-Chr15:5196858 Blo04g00882 Blo-Chr4:10098299 1.10E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116