Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00392 ATGTTTGCTTTGTTTCTGGTTCTTGGTTCTCGGTTCGGTGTGGGTCTCAATTCTTGGTGTATAGAACCGACCAGAACTGATAATTGTAAAGAGGGTACCCTAAGTCAGATCTTCGTGTTCTCGCCTCGGTTCTTGCCCTTCCCAATTCCTGCAGATCGGCACCTTGCCCTTCTCAGTTCTCTCAGATCGGCGCACTCCCAGTTTCTCTCATTCTTGGTTCTTGCCCTTATTGTTTCTGCATTCTCGGTTCTTGCCCTTCTCAGTGCGGAGTTGAAGTATAATTACAGTTCTGCTAATGGGCTTGAAGCCCATTTCTCCAAACTTGAAATAGAAGAGAAGAAAGTTGCTCAAAATCCTAACGCAGTTGTCCTTCAAAGCGGTGGTCGTGAAGCAAGAACGAGCATCGGCAGCGCTCTGGCAGATGTATTGAAACGGGAGGTCGGCGAGCTTTCCGCTAGGAATTTCGCTCACCGCCTCGCTGCCTCCGAGGATCTTGTGCTCCGATTTGATATTGACAGGAAATTAGAAAAGCACAGAGGTTGTGTGAACACATTGAGCTTTAGTGATGATGGCGACATCCTAGTCTCAGGTTCGGATGACAGGCATGTAATTCTATGGGATTGGGAAACTGGGCGGATCAAGCTTTCCTTTCATTCTGGCCACAGTAACAATGTTTTCCAAGCGAAGATCATGTCTGGCACCAATAATCGAAGCATCGTTACTTGTGGTGCAGATGGGCAGGTGAGACATGCTCAAATTCTTGAAAATGGACGTGTGGAGCCTGTTCTGCTTGCTAGACATTATGGAGGAGCTCATAAATTGGCCATTGAGCCTGGAAGCCCTTATATATTTTATTCTTGTGGAGAAGATGGATTGGTGCAACATTTTGATTTAAGAACTGGAGGTGCAACTGAACTTTTCACATGCGAAGCTGTTAATAGGCAGAGACGATACACATCACTCATCCAACTAAATGCAATTTCAATTGATCCAAGGAACCCAAATCTCTTCGCTGTTGCTGGGTCAGATGAGTATGCTCGACTTTATGATATACGAAAATACAAGTGGGATGGATCATCTGATTTTGGTCGACCTATCAACTTTTTTTGTCCCACACATTTGATTGGTGACGATAATGTTGGAATTACAGGCTTGGCCTTTTCAGAACTAAGTGAACTTCTTCTCTCATACAATGAGGAAAATATATATCTTTTTACTAGTCATATGGGTTTAGGATCAAATCTCGTTCCTGCCTCTCCAGAACCTGTTCCTTGTGATGCAAAGGAAGTAGGGACTGATGACGATTCCATCACATCAATGGTGGGTTCTGGTGAAGTCGTTTCTCCTCAAGTTTACAAGGGGCACAGGAACTGTGACACAGTGAAGGGTGTAAACTTTTTAGGGCCTAAATGTGAGTATGTCATGAGTGGTTCTGACTGTGGTCGTATATTCATTTGGAAAAAGAAAAGTGGGGAGTTGATTCGAGTCATGGAAGCAGATAAGCATATTGTCAACTGTATTGAGTGTCATCCTCATAGCACTGTTCTTGCAAGTAGTGGAATAGAAGATGACATAAAGATATGGATCCCAAAGGCCCTCGAGAGAGCTAAGCTTCCAGCAAAAATTGAACAGGTCATTGCTCTTGGTTTTGATTATTGTTTGCTAAAGATCTGTCCCACAGTTTCTTTTTCTAGTTTTGTTTTATTCGTTTTTGAGAAGAAGAATCGTTATCAACATCATTGGCTTATCTCTGACGATGATGTTGATGATGATGATGAGGAGGAGAACGATGATCTTTCAGATGATGCTGATTACGACATTGACACTGATGATTATGATGAAGATTGCAATGATTCTATCGAAGAAGATAAGTGA 1875 42.88 MFALFLVLGSRFGVGLNSWCIEPTRTDNCKEGTLSQIFVFSPRFLPFPIPADRHLALLSSLRSAHSQFLSFLVLALIVSAFSVLALLSAELKYNYSSANGLEAHFSKLEIEEKKVAQNPNAVVLQSGGREARTSIGSALADVLKREVGELSARNFAHRLAASEDLVLRFDIDRKLEKHRGCVNTLSFSDDGDILVSGSDDRHVILWDWETGRIKLSFHSGHSNNVFQAKIMSGTNNRSIVTCGADGQVRHAQILENGRVEPVLLARHYGGAHKLAIEPGSPYIFYSCGEDGLVQHFDLRTGGATELFTCEAVNRQRRYTSLIQLNAISIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSSDFGRPINFFCPTHLIGDDNVGITGLAFSELSELLLSYNEENIYLFTSHMGLGSNLVPASPEPVPCDAKEVGTDDDSITSMVGSGEVVSPQVYKGHRNCDTVKGVNFLGPKCEYVMSGSDCGRIFIWKKKSGELIRVMEADKHIVNCIECHPHSTVLASSGIEDDIKIWIPKALERAKLPAKIEQVIALGFDYCLLKICPTVSFSSFVLFVFEKKNRYQHHWLISDDDVDDDDEEENDDLSDDADYDIDTDDYDEDCNDSIEEDK 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5492854 5498835 - BLOR06786 Blo15g00392 70792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00392 624 SMART WD40_4 445 487 IPR001680 GO:0005515
Blo15g00392 624 SMART WD40_4 210 252 IPR001680 GO:0005515
Blo15g00392 624 SMART WD40_4 258 297 IPR001680 GO:0005515
Blo15g00392 624 SMART WD40_4 490 529 IPR001680 GO:0005515
Blo15g00392 624 SMART WD40_4 168 207 IPR001680 GO:0005515
Blo15g00392 624 SMART WD40_4 314 350 IPR001680 GO:0005515
Blo15g00392 624 Pfam WD domain, G-beta repeat 174 207 IPR001680 GO:0005515
Blo15g00392 624 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 212 - -
Blo15g00392 624 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 122 544 IPR045151 -
Blo15g00392 624 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Blo15g00392 624 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 122 544 - -
Blo15g00392 624 MobiDBLite consensus disorder prediction 586 624 - -
Blo15g00392 624 Gene3D - 162 530 IPR015943 GO:0005515
Blo15g00392 624 SUPERFAMILY WD40 repeat-like 168 528 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00392 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - zju:107427406 634.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00027 Blo-Chr7:474217 Blo15g00392 Blo-Chr15:5492854 2.62E-30 dispersed
Blo15g00392 Blo-Chr15:5492854 Blo04g01044 Blo-Chr4:14472870 1.80E-15 dispersed
Blo15g00392 Blo-Chr15:5492854 Blo11g00015 Blo-Chr11:137462 2.59E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00392 Blo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.779921 1.196939 0.0