Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00399 ATGGCTGCCAAGAATTACCATGTTCGTTCTAACAGCTTGCCCACAAAGCCACACCCAGTCCTCTCCCAAGCCGAGGCGCATTTGAGCAGATTGAGAGCTTCTGAAACAGCCACTTCTTCTCCTATTGCATCTCAGAAATTGAGTGGTCTTCTCCATCTTCACGACTCCATTGATGAGTTGCTCGAGCTCACTCTGACTCGACAAGCTCTTCTTGGAGCGTGCAGTGAGGAGAAGAGGATTGCAGCCGAGCTTCTTGAAGGGTCTATCCGAGTGGCAGATCTGTGCGGAATCGCCAGAAATTTGTTAGTGGAGTCGAAGGAGTTTGTACAGGAATTGCAGTCCATTTTGAGGAGGAAAGGAGATAAAATGGGGAATATTGTTTCAAGAGACAACCTTAAAAACTGTTTGGCCGCTAGGAAAATGACTAAGAAAGCAATAAGAAAATCCTTGAAAGCGATAGAAAGAAAGAAAAACGAGACAAAGCAACAAAACTCAGGCGTGCTTGGTCTGTTGAGAGAGGCGGAAGTAGTAACCTTGAACACTGTGGAGCGCTTACTGAGATCGTTAGGAGGGTGGAATTCACCATTAAAGGCGAGAAGCTTTTCATTCGTTTCAAAGCTCGTCAATTCCAGAAGGGTAGACGAGGAAGAAAGACAAGAACTTCAAACAGTAGACCTAGCCCTGAGCTCGATCGTGGGCAACAAGACGATCAAAGAACAGGACCTGCAAAACATTCTTGGTAAACTGGAATCCAGCTTCGGAGTTCTCGAGGAAGATGTTGAAAGCCTCTACAGAATGCTGATCAGAAATAGGGTTTCACTTCTTAATGTCTTCAACCACTGA 843 45.55 MAAKNYHVRSNSLPTKPHPVLSQAEAHLSRLRASETATSSPIASQKLSGLLHLHDSIDELLELTLTRQALLGACSEEKRIAAELLEGSIRVADLCGIARNLLVESKEFVQELQSILRRKGDKMGNIVSRDNLKNCLAARKMTKKAIRKSLKAIERKKNETKQQNSGVLGLLREAEVVTLNTVERLLRSLGGWNSPLKARSFSFVSKLVNSRRVDEEERQELQTVDLALSSIVGNKTIKEQDLQNILGKLESSFGVLEEDVESLYRMLIRNRVSLLNVFNH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5649152 5649994 - BLOR06793 Blo15g00399 70799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00399 280 Coils Coil 143 163 - -
Blo15g00399 280 Pfam Protein BPS1 46 277 IPR004320 GO:0048364|GO:0048367
Blo15g00399 280 PANTHER BPS1-LIKE PROTEIN 4 280 - -
Blo15g00399 280 PANTHER - 4 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00399 - - - csv:101220720 222.631
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01621 Blo-Chr1:56111921 Blo15g00399 Blo-Chr15:5649152 4.30E-06 dispersed
Blo05g00694 Blo-Chr5:23353025 Blo15g00399 Blo-Chr15:5649152 2.71E-17 dispersed
Blo12g00862 Blo-Chr12:26857381 Blo15g00399 Blo-Chr15:5649152 1.96E-07 dispersed
Blo15g00399 Blo-Chr15:5649152 Blo15g00400 Blo-Chr15:5698955 2.71E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00399 Blo_Chr15 FPKM 58.922062 66.041969 190.626038 190.06459 58.403923 60.753628 50.543713 206.671051 207.974625 188.478394