Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00404 ATGGGAATAGGAAACAACGAAAGAAAAAACTGGAACAACAAAGTATGCAAATTTGGAACCGAAAATCAGTCGGGGCGAGGAGGAGGAAGAGATCGCTATCAGAAAGATAACTCCAGATTCGAAGAGCGGAGTAATTCGGGGCATTCCAGCCACAGTAACCCTCCTTCTAGGCACCTTTGGGTTGGAAATCTATCTCACAGCATTGGAGAGCATGATCTCACCCGTCATTTTCTACAATTTGGAGACCTCGACTCAGTCGCATTTCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCATTAGGGATGATGATGCCATTGCTGCTATGAAAGAGCTTAGTGGTTTTCCCCTTGCCGGAAATCCTCTTAGAATTGAGTTTGCCAAGGCGGATAAACCACCAGCCACGTCACGAGGTGAAGACTATTCAAAATTTCGAGATGAACAATATCATGGAGCTAAGGGATCTCCTTTCTTGCAGGAGTTCAGGGGGCGTGATGATAGCCCTGACTCATTTTATACTGAAAAAGCTAAGATGAATGATAGAAATACTGAACCTAGTGAGGTTTTATGGATTGGATTTCCAGTCTCCCTAAAAGTAGATGAAATGAATTTAAGAAAGGCCTTCTCACCGTTTGGAGAGATAGAAAAAATTACTACATTTCCTGGTCGAAGTTATGCTTTTGTTCGATTCAGGAGTTTAATATCAGCTAGCAGAGCAAAAGAGACTCTTCAGGGAAAGCTCTTTGGAAATTCTCGTGTCCACATTTGTTTTGCTAGGAATGAATCTGGCTCATCCAATAGTGGAAGGAGTTCAGCAAATGCCCCAACTTCGCCAATCTTGAAGTCGAATAGTCGCCAGGGATTTATGGATAACTACCAGCCTGACAAGAATTTTGGAAGCATAACCGGAGATCCTGGCATTAGATCTCAATTTTTCTCAAATTTGGAGTCTGAAGATTCCGATTCCTATAATTTTAACAGAAATAGTACTTTATGGACAGGTGGGGGTGCTGCATTTGAATCAAGGAGATCTGGCGAAATGGAGTCTAAATTTGGTTCATCACAAGATTCTTACAGATATCACAGTAATCCGGCAAATGAGAGAATAGGGCATATGCATGGCCTTCCTCAGAGATTTTCTCAGAACACTTCATTTTCTGAAGATCATTGGGAGTCAAGAGATGATGTCTATCCACAAAATCATGAGTCCAAGAAATTGAAGACTGGCTCGTTTCCTCCTGAAAAGGAGCTTCCTGAGTATCCCTTATCTGCATTACACCAAGAAAAGCATGTTTTCCCAAAGTTGTACTCTGATTTTCATCAATCTGAGGCCTTTGATAAGAAGTTTGAGGCTGGACAATTGGGATATCAACAGATTTCTGAACGTCCAATGAAATTAGCTCTACCTTTTGGAGAAACGAATGAACCTTTGAGGGAACCTTATGATTCTTTCTTGGACTCTAATTCTGTCCCATCAAATACCAATGGGAGAAAGCGTTTTGCTCCTGAATCAGAGCGTCCTTCTTTGAAAGAGTGGAAATGGGAAGGGACTATAGCGAAGGGAGGGACCCCTGTCTGTCGTGCTCGTTGCTTCCCGGTTGGGAAAATCATGGACATGATGTTGCCAGAATTTTTAGACTGCACGGCGAGGACGAGTCTAGACATGCTTTCAAAGCATTACTACGAAGCAGCTTCAGCTTGGGTTATTTTTTTTGTGCCAGGAGGTGATTCTGAAATTGGATTATATAATGAATTCATGAATTATCTTGGCGATAAGCAGAGAGCAGCAGTTGCTAAGTTGGATGAGGAGACCACTTTGTTTCTCGTACCACCATCAGATTTCTCTCAGAAAGTACTCAAAGTACCCGGCAAATTGAGCATATCTGGTGTAATTCTAAGGTTAGAGCGGTCTGGTCCAAATTTTATGGCTGAAAATAAGGACTCGAATATGATGGTATTTCATGGAGGTGCATCATATTCTAAAGAATCAGCTTCTATTCCTCTAATGTCTGATTTCCGTCAAACTGGAGTGAACAATGTTTCTTTGCCGGCGAATACTATTGCAAGTTTATCGGATTCTTATGAGGAAGACCATATTCATCACCAAAATTTGATTGGACAAAACTGGTCTTCCCTCCGTCTGCAGAATTCAAATGTTGGCATTAGAAATGTACCATCACAACCTACCAAAAGCTCTATTGATTCTATTGTCCAAGACCATCACCAAGTACATATGCCTAGGGAGTTCCAAGAACCTAACTCTAATCGTTTTTCAGGTGGATATTCCGGCCTTCCTTTTACTGGAAACTTGATGTCAACTCAGGCAGAAACTCAATCTGCAGTCTCTTTAACTACGACAGCACCAGCTTTGCAGCCGGAGCAACTAGCACAACTAGCTTCATCTCTTCTTGGGCAGCAGAGGCAGGCACAAATAGCCACAAATGGGAAAGATCTAATGCACAGAAATACTTCTGAACACTTGTTTGGAACATCTATGATGTATTCTTCACAGAATAATCAGGTCAATTCCGGTCTTTCATCATCGCAATTTGGGCAACCTCAGCAATCTCAGCTATCACATCAGCAGCCACCAGCCATGGACGTCCGGCAAGATACAGCTCAAAGAGAGGGTCAAGCAGTGGCCTCAAGCGGACGGGAAGAGGCAGAAGCAGATCCTCAGAAACGCCTGCAAGCTACATTACAGCTAGCTGCTGCTCTTCTTCAGCAAATTCAACAAGGAAAAGGAAGTTAA 2751 42.49 MGIGNNERKNWNNKVCKFGTENQSGRGGGRDRYQKDNSRFEERSNSGHSSHSNPPSRHLWVGNLSHSIGEHDLTRHFLQFGDLDSVAFQPGRSYAFINFIRDDDAIAAMKELSGFPLAGNPLRIEFAKADKPPATSRGEDYSKFRDEQYHGAKGSPFLQEFRGRDDSPDSFYTEKAKMNDRNTEPSEVLWIGFPVSLKVDEMNLRKAFSPFGEIEKITTFPGRSYAFVRFRSLISASRAKETLQGKLFGNSRVHICFARNESGSSNSGRSSANAPTSPILKSNSRQGFMDNYQPDKNFGSITGDPGIRSQFFSNLESEDSDSYNFNRNSTLWTGGGAAFESRRSGEMESKFGSSQDSYRYHSNPANERIGHMHGLPQRFSQNTSFSEDHWESRDDVYPQNHESKKLKTGSFPPEKELPEYPLSALHQEKHVFPKLYSDFHQSEAFDKKFEAGQLGYQQISERPMKLALPFGETNEPLREPYDSFLDSNSVPSNTNGRKRFAPESERPSLKEWKWEGTIAKGGTPVCRARCFPVGKIMDMMLPEFLDCTARTSLDMLSKHYYEAASAWVIFFVPGGDSEIGLYNEFMNYLGDKQRAAVAKLDEETTLFLVPPSDFSQKVLKVPGKLSISGVILRLERSGPNFMAENKDSNMMVFHGGASYSKESASIPLMSDFRQTGVNNVSLPANTIASLSDSYEEDHIHHQNLIGQNWSSLRLQNSNVGIRNVPSQPTKSSIDSIVQDHHQVHMPREFQEPNSNRFSGGYSGLPFTGNLMSTQAETQSAVSLTTTAPALQPEQLAQLASSLLGQQRQAQIATNGKDLMHRNTSEHLFGTSMMYSSQNNQVNSGLSSSQFGQPQQSQLSHQQPPAMDVRQDTAQREGQAVASSGREEAEADPQKRLQATLQLAAALLQQIQQGKGS 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5763494 5772349 + BLOR06798 Blo15g00404 70804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00404 916 MobiDBLite consensus disorder prediction 260 300 - -
Blo15g00404 916 SUPERFAMILY RNA-binding domain, RBD 186 271 IPR035979 GO:0003676
Blo15g00404 916 Pfam SPOC domain 508 623 IPR012921 -
Blo15g00404 916 PANTHER RNA-BINDING PROTEIN SPENITO 25 906 - -
Blo15g00404 916 SMART rrm1_1 58 125 IPR000504 GO:0003723
Blo15g00404 916 SMART rrm1_1 188 256 IPR000504 GO:0003723
Blo15g00404 916 MobiDBLite consensus disorder prediction 484 504 - -
Blo15g00404 916 Gene3D - 29 157 IPR012677 -
Blo15g00404 916 MobiDBLite consensus disorder prediction 836 895 - -
Blo15g00404 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 129 IPR000504 GO:0003723
Blo15g00404 916 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 906 - -
Blo15g00404 916 MobiDBLite consensus disorder prediction 1 58 - -
Blo15g00404 916 MobiDBLite consensus disorder prediction 836 868 - -
Blo15g00404 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 122 IPR000504 GO:0003723
Blo15g00404 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 254 IPR000504 GO:0003723
Blo15g00404 916 MobiDBLite consensus disorder prediction 28 46 - -
Blo15g00404 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 260 IPR000504 GO:0003723
Blo15g00404 916 SUPERFAMILY RNA-binding domain, RBD 44 134 IPR035979 GO:0003676
Blo15g00404 916 Gene3D - 172 270 IPR012677 -
Blo15g00404 916 MobiDBLite consensus disorder prediction 6 20 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g00170 Blo15g00404 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00264 Blo-Chr12:16012748 Blo15g00404 Blo-Chr15:5763494 5.19E-08 dispersed
Blo15g00404 Blo-Chr15:5763494 Blo12g00945 Blo-Chr12:27591699 2.09E-07 dispersed
Blo15g00404 Blo-Chr15:5763494 Blo01g00191 Blo-Chr1:2582938 6.88E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00404 - - qsu:112036202 926.006