Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00428 ATGAGCTGCGTCGTAATGGAGAAGCTAGTTCTGAATCGGAGTTCGGATTTTTCGCTGAAGAGTGGAGATGATGGGAGCGATTCGGTGAAGAAAATGATGGAGGTGATAGAGACTGTGGGGAAATACAGTTCGTATCGGAGAACTCAGAGGAAGGAGTGCTTAAACTTAGTGAGGAGGTTGAAGCTCTTGGTTCCTCTTTTGGAGGAGATGAGAGAGGTTGATTCGACTCTGAAGTCTACTCAAGCATTGAATCGTCTTGATAATTTGAAGAACGCTCTCCTTTTGGCCAAGAAGCTGTTGAAGGATTGTAACTATGGAAGCAAGATCTACATGGCATTGGAAAATGAGGCCGTGATGGGAAGATTTCATGCTGTTTATGACAAATTAAACGATGCCTTGGATCAGATGCCTTACAATGAGCTCGGAATCTCAGATGAAGTGAAAGAGCAAGTGGAGCTGATGCGTATGCAACTCAAAAGAGCAAAGAGAAGGGCAGATACACAAGACATAGAGCTAGCCATGGATATGATGATTGTATTCTCAAAAGAGGCTGACAGAAATGTTGATAGCGTGATAATACAAAGACTGGCTAATAAGTTGGAGCTTTACACCATTACAGACATGACAGCAGAAACAGAAGCTGTCAAAAAGCTTGCTAAAGTGAGAAGAGGGCAGAATTCTGAGAGCATCCAGCAAATTTTAGATCTTTTAGGAAAATTCAAACAGATCGCAGGAATTGACCAGAGCACTGGTCTCGACGGACCCATCTCGGTAAAATGTTTGCAGAAGTGTGGTTCGTCGTTGATTCCTAATGAATTTCTCTGCCCAATCACGTTAGAGATCATGACAGATCCTGTTATTGTGGCAACTGGACAGACTTACGAACGAGAAAGTATACAAAAGTGGCTGAGATCAAATCATCAGACCTGTCCGAAGACTGGACAAACCTTGGATCACTTGTCGATGGCACCGAATCACGCCCTCAAGAACCTCATCCAACAGTGGTGTGAAAAGAACAATATGGAGCTTCCTCGAAAGGAACCAGTTGGATCAAACGGGTGTCTAGCTGAACTTATAGATGAAATCTCATCCTTAGTTCATAATCTATTATCTTCTGATACCGATGTTCAGAGAGAGGCGATCATGAAGATCCGAATTCTCTCGAAAGAGAACCCACAAAACAGAATTCTAATTGCAAACAGCGGAGGAATCACTCCTCTGGTTCACTTATTGTCTCATCCAGATCCGAGGTTTCAAGAACATACTGTAACGGCACTCTTGAACTTGTCGATCGACGAAGAAAATAAAAGAATCATCGCAAGAGAAGGTGCTATTCCGGCCATTATCGAAATACTTGGAAATGGAACGGATGAAGCTAAAGAGAATTCAGCTGCTGCTTTGTGTAGTCTATCAATGCTTGATGAGAACAAAGTACTGGTGGGAGCTTTAAGTGGAATATCTCCATTGGTAAACCTTCTGAAAAATGGGACAACAAGAGGTAAGAAAGATGCAGCCACTGCATTGTTTAACTTGCTACTGATCCAAGCCAACAAGTCTAGAGCAACAAAGGCAGGTATAATTACTCCATTGCTGAATCTACTCGAAGATAGAAGCTTGGGTATGATCGATGAAGCTCTCTCGGTCATACTACTTCTCGTATCACATCCTCATGGCCGAAGCGAGATTGGGACGCTCTCATTCATCGAAACTTTAGTCAATATTACAAAAAATGGGACTGCGAAGAACAAAGAATGTGCCGTGTCAGTTCTCCTAGAGCTAGGACTGAAAAATTCAACTTTCATTTTGGCTGCACTTCAATATGGTGTCTATGATCCTCTGGTAGAGTTATCGAGAAGTGGGACGAATCGAGCACAGAGAAAGGCCAGCTCGCTTCTGCTGGAAATGAGTAAGGGTGAACACATTCCGTGA 1929 42.92 MSCVVMEKLVLNRSSDFSLKSGDDGSDSVKKMMEVIETVGKYSSYRRTQRKECLNLVRRLKLLVPLLEEMREVDSTLKSTQALNRLDNLKNALLLAKKLLKDCNYGSKIYMALENEAVMGRFHAVYDKLNDALDQMPYNELGISDEVKEQVELMRMQLKRAKRRADTQDIELAMDMMIVFSKEADRNVDSVIIQRLANKLELYTITDMTAETEAVKKLAKVRRGQNSESIQQILDLLGKFKQIAGIDQSTGLDGPISVKCLQKCGSSLIPNEFLCPITLEIMTDPVIVATGQTYERESIQKWLRSNHQTCPKTGQTLDHLSMAPNHALKNLIQQWCEKNNMELPRKEPVGSNGCLAELIDEISSLVHNLLSSDTDVQREAIMKIRILSKENPQNRILIANSGGITPLVHLLSHPDPRFQEHTVTALLNLSIDEENKRIIAREGAIPAIIEILGNGTDEAKENSAAALCSLSMLDENKVLVGALSGISPLVNLLKNGTTRGKKDAATALFNLLLIQANKSRATKAGIITPLLNLLEDRSLGMIDEALSVILLLVSHPHGRSEIGTLSFIETLVNITKNGTAKNKECAVSVLLELGLKNSTFILAALQYGVYDPLVELSRSGTNRAQRKASSLLLEMSKGEHIP 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6165272 6167714 - BLOR06822 Blo15g00428 70828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00428 642 Gene3D - 25 138 IPR036537 GO:0007166
Blo15g00428 642 Gene3D - 478 640 IPR011989 -
Blo15g00428 642 SMART arm_5 351 389 IPR000225 GO:0005515
Blo15g00428 642 SMART arm_5 391 431 IPR000225 GO:0005515
Blo15g00428 642 SMART arm_5 432 472 IPR000225 GO:0005515
Blo15g00428 642 SMART arm_5 597 637 IPR000225 GO:0005515
Blo15g00428 642 SMART arm_5 473 513 IPR000225 GO:0005515
Blo15g00428 642 SMART arm_5 514 554 IPR000225 GO:0005515
Blo15g00428 642 Pfam Armadillo/beta-catenin-like repeat 474 511 IPR000225 GO:0005515
Blo15g00428 642 Pfam Armadillo/beta-catenin-like repeat 391 430 IPR000225 GO:0005515
Blo15g00428 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Blo15g00428 642 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Blo15g00428 642 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 637 - -
Blo15g00428 642 SUPERFAMILY ARM repeat 362 638 IPR016024 -
Blo15g00428 642 Coils Coil 144 164 - -
Blo15g00428 642 Gene3D - 361 477 IPR011989 -
Blo15g00428 642 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Blo15g00428 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Blo15g00428 642 CDD RING-Ubox_PUB 273 315 IPR045210 -
Blo15g00428 642 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Blo15g00428 642 SUPERFAMILY RING/U-box 269 343 - -
Blo15g00428 642 PANTHER U BOX DOMAIN-CONTAINING 24 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01082 Blo-Chr12:28518654 Blo15g00428 Blo-Chr15:6165272 3.26E-17 dispersed
Blo15g00428 Blo-Chr15:6165272 Blo18g00747 Blo-Chr18:20192362 0 dispersed
Blo15g00428 Blo-Chr15:6165272 Blo03g01130 Blo-Chr3:37761378 2.01E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00428 - - tcc:18607402 872.078