Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00434 ATGGGTCTCTCGAGCCTTCCGACTCCATCCGAGGGAATATTTTCTGTATTAGTACAAACTGCATTATCCATTTCCTTCTTCAAAAGCATAGTTGGATCGATTCTCCATATCATCGGCATTGGCATCTTGTCATCATCCTCTTCGCAATTGCCAGCAGACTCTGTCGAAATTTCTGCAGACTACCTCAATTTTCATCTTGGTTATTCCGAGACATACATTGAGGAATTCCGAAGGAGGGTGCCCGGCATTCGATTCGACAAAGCTTGCAACAGTCGGCAGCCTGAGCTGAACTGCTCAGTTTGCTTGACTCAATTTGAGCCTGAATCAGAGATTAACCTGTTGTCCTGTGGCCATATTTTTCACAAAGTGTGCCTGGAGAAGTGGCTAGACTACTGGAATGTCACATGCCCAATGTGTAGGACTCCATTAACGCCAGAAGAAGAGAGAGTTAGCTGA 456 45.39 MGLSSLPTPSEGIFSVLVQTALSISFFKSIVGSILHIIGIGILSSSSSQLPADSVEISADYLNFHLGYSETYIEEFRRRVPGIRFDKACNSRQPELNCSVCLTQFEPESEINLLSCGHIFHKVCLEKWLDYWNVTCPMCRTPLTPEEERVS 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6322877 6323332 + BLOR06828 Blo15g00434 70834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00434 151 Pfam Ring finger domain 97 140 IPR001841 -
Blo15g00434 151 SUPERFAMILY RING/U-box 93 145 - -
Blo15g00434 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 148 - -
Blo15g00434 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Blo15g00434 151 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Blo15g00434 151 SMART ring_2 98 139 IPR001841 -
Blo15g00434 151 PANTHER - 1 148 IPR044249 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00447 Blo15g00434 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00434 Blo-Chr15:6322877 Blo01g00383 Blo-Chr1:4374573 7.50E-14 dispersed
Blo13g00447 Blo-Chr13:24820990 Blo15g00434 Blo-Chr15:6322877 9.03E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00434 K16285 - tcc:18612514 183.726