Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00443 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTGCCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTTCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGACTACTCCACTTCCATTGACTTCAATCTCTCTGGCTCCACCAGCAATGTTCCATCATCAACAGTTTCCGCTTACCTTCAAAAGATGCAAAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCTGAAATGCTGGACTTGGCCCCACTTGCCGTTCCGAGCATTGAGCAGCAAGACGCTTTGACTTTTGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCAAAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCATTGTAAAACTTCAGGAAAGCCCTTTTATGCGATTCTTCATCGAATTGATGTTGGTTTAGTCATAGATTTAGAACCCGTTAATCTAGCTGATGTACCGGTGACAGCTGCAGGGGCATTGAAATCATATAAGCTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGTTGGTCAAAGAAGTTAGTGATTTGACGGGTTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCCGAATGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCTGCTACAGATATACCGCAAGCCTCAAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGCGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAGTTTGACTCAGCCATTGAGTCTTTGTGGATCAGTTCTCAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCGTCTCTTGTTATGTCTGTAACGATCGATGAGGATGATAATGAGGTGGAGAGCGACCAGCAGAAGGGAAGAAAATTGTGGGGCTTAGTGGTTTGTCATCACACAACCCCTTGGTTTATCCCATTTCCTTTGCGATATGCTTGTGAGTTCTTGATTCAAGTTTTCGGTATTCAAATCAACAAAGAAGTTGAGTTGGCTGCTCAACTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGACGTCCCTGTGGGAATCATTACACAATCGCCTAATATAATGGATCTCGTCAAGTGTGATGGAGCCGCTCTTTATTACAAGAAGAAATTGTGGGTGCTAGGAGTTACTCCGGCCGAAGCACAAATTAGAGATATAGCTGATTGGCTTCTTCAGAATCATAGTGGGAGCACTGGGCTGAGTACGGATAGCCTCACGGAATCTGGCTACCCAGGTGCTTCTGATCTCGGCAATGAGGTATGTGGGATGGCTGCCATTAAAATCACAGCGAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCAAATGACAAGGACGATGGGCGGAAGATGCATCCAAGGTCGTCTTTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGGGGATCTCTACAGGACGAGATAGAGGACGACTCCAAAATGATTGTGAATGTTCCCTCAGCCGATGACACAATACAAAGTTTGGATGAATTGCGGGTTGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCTGTCCCCATCTTAGCTGTTGATTCCTCGGGCGTTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACAGGACTGCCAGTACAAGAAGCAATCGGCAGACTCTTTGTCGACGTTGTTGCTGATGAGTCGGTCGAGGTTGTGAAGAATATGCTTTCCTTGGCTCTTCAAGGTGATTCTGCTCTTATCTCTTATAAGCTTGCCTGA 2079 44.59 MSSKSTNKTNCSRSSSARSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSGSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALQKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSSLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEDDNEVESDQQKGRKLWGLVVCHHTTPWFIPFPLRYACEFLIQVFGIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIITQSPNIMDLVKCDGAALYYKKKLWVLGVTPAEAQIRDIADWLLQNHSGSTGLSTDSLTESGYPGASDLGNEVCGMAAIKITAKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEDDSKMIVNVPSADDTIQSLDELRVVTNEMVRLIETAAVPILAVDSSGVINGWNIKASELTGLPVQEAIGRLFVDVVADESVEVVKNMLSLALQGDSALISYKLA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6505500 6507578 + BLOR06837 Blo15g00443 70843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00443 692 SMART gaf_1 219 408 IPR003018 GO:0005515
Blo15g00443 692 SUPERFAMILY GAF domain-like 406 584 - -
Blo15g00443 692 Pfam GAF domain 220 398 IPR003018 GO:0005515
Blo15g00443 692 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Blo15g00443 692 PANTHER PHYTOCHROME C 1 682 - -
Blo15g00443 692 CDD PAS 624 682 IPR000014 -
Blo15g00443 692 Pfam PAS fold 616 684 IPR013767 GO:0006355
Blo15g00443 692 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 682 - -
Blo15g00443 692 TIGRFAM sensory_box: PAS domain S-box protein 620 688 IPR000014 -
Blo15g00443 692 Pfam PAS fold 70 186 IPR013654 GO:0006355
Blo15g00443 692 MobiDBLite consensus disorder prediction 1 26 - -
Blo15g00443 692 SMART pas_2 615 681 IPR000014 -
Blo15g00443 692 MobiDBLite consensus disorder prediction 1 27 - -
Blo15g00443 692 Gene3D PAS domain 76 322 - -
Blo15g00443 692 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 684 IPR035965 -
Blo15g00443 692 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Blo15g00443 692 Gene3D - 200 559 IPR029016 -
Blo15g00443 692 SUPERFAMILY GAF domain-like 199 395 - -
Blo15g00443 692 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Blo15g00443 692 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Blo15g00443 692 Gene3D PAS domain 605 687 - -
Blo15g00443 692 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Blo15g00443 692 Gene3D - 403 576 IPR043150 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00443 - - - qsu:111989287 1162.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00443 Blo-Chr15:6505500 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00443 Blo-Chr15:6505500 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00878 BCT 9 1158 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1365.5
Blo16g00087 BCT 35 1178 Histidine Kinase Gene Family AT2G17820 63.7 0.0e+00 1358.2
Blo11g00965 . 17 1036 Histidine Kinase Gene Family AT2G01830 69.6 0.0e+00 1333.2
Blo01g00163 . 159 1111 Histidine Kinase Gene Family AT2G01830 52.4 7.3e-271 930.6
Blo12g00277 . 8 927 Histidine Kinase Gene Family AT2G01830 53.8 3.7e-267 918.3
Blo02g00136 . 308 1182 Histidine Kinase Gene Family AT2G01830 50.4 1.5e-236 816.6
Blo01g01429 . 1 940 Histidine Kinase Gene Family AT5G10720 59.1 1.0e-292 1003.0
Blo18g00692 . 112 1231 Histidine Kinase Gene Family AT1G09570 75.9 0.0e+00 1735.7
Blo07g00144 CCT 699 1790 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1175.6
Blo01g00030 CCT 36 1148 Histidine Kinase Gene Family AT1G09570 52.6 0.0e+00 1164.8
Blo02g00140 BCT 494 1519 Histidine Kinase Gene Family AT1G09570 53.7 0.0e+00 1130.5
Blo01g00879 . 36 1109 Histidine Kinase Gene Family AT1G09570 50.3 2.9e-310 1061.6
Blo15g00443 . 12 682 Histidine Kinase Gene Family AT1G09570 61.9 3.7e-249 858.6
Blo01g00030 CCT 12 1084 Histidine Kinase Gene Family AT2G18790 75.4 0.0e+00 1607.0
Blo07g00144 CCT 700 1741 Histidine Kinase Gene Family AT2G18790 75.7 0.0e+00 1601.3
Blo01g00879 . 15 1047 Histidine Kinase Gene Family AT2G18790 62.1 0.0e+00 1286.6
Blo02g00140 BCT 494 1510 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1083.2
Blo18g00692 . 132 1166 Histidine Kinase Gene Family AT2G18790 50.8 9.7e-306 1046.6
Blo15g00443 . 23 683 Histidine Kinase Gene Family AT2G18790 61.5 6.9e-235 811.2
Blo02g00140 BCT 499 1520 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1308.1
Blo07g00144 CCT 691 1792 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1133.2
Blo18g00692 . 120 1226 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1105.5
Blo01g00030 CCT 39 1144 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1102.4
Blo15g00443 . 10 682 Histidine Kinase Gene Family AT5G35840 68.7 1.1e-274 943.3
Blo15g00444 BCT 1 367 Histidine Kinase Gene Family AT5G35840 52.7 3.2e-107 387.1
Blo07g00144 CCT 673 1792 Histidine Kinase Gene Family AT4G16250 72.9 0.0e+00 1638.2
Blo01g00030 CCT 8 1144 Histidine Kinase Gene Family AT4G16250 72.0 0.0e+00 1637.5
Blo01g00879 . 35 1109 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1307.7
Blo02g00140 BCT 482 1520 Histidine Kinase Gene Family AT4G16250 52.4 1.1e-312 1069.7
Blo15g00443 . 24 683 Histidine Kinase Gene Family AT4G16250 59.4 2.4e-227 786.2
Blo01g00879 . 14 1110 Histidine Kinase Gene Family AT4G18130 64.4 0.0e+00 1400.6
Blo07g00144 CCT 708 1786 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1249.2
Blo01g00030 CCT 39 1145 Histidine Kinase Gene Family AT4G18130 57.1 0.0e+00 1237.6
Blo15g00443 . 28 683 Histidine Kinase Gene Family AT4G18130 55.3 7.8e-207 718.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00443 Blo_Chr15 FPKM 2.769486 2.036337 2.269166 3.392059 3.372377 3.97319 4.67098 7.214996 6.420252 7.471004