Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00443 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTGCCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTTCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGACTACTCCACTTCCATTGACTTCAATCTCTCTGGCTCCACCAGCAATGTTCCATCATCAACAGTTTCCGCTTACCTTCAAAAGATGCAAAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCTGAAATGCTGGACTTGGCCCCACTTGCCGTTCCGAGCATTGAGCAGCAAGACGCTTTGACTTTTGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCAAAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCATTGTAAAACTTCAGGAAAGCCCTTTTATGCGATTCTTCATCGAATTGATGTTGGTTTAGTCATAGATTTAGAACCCGTTAATCTAGCTGATGTACCGGTGACAGCTGCAGGGGCATTGAAATCATATAAGCTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGTTGGTCAAAGAAGTTAGTGATTTGACGGGTTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCCGAATGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCTGCTACAGATATACCGCAAGCCTCAAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGCGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAGTTTGACTCAGCCATTGAGTCTTTGTGGATCAGTTCTCAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCGTCTCTTGTTATGTCTGTAACGATCGATGAGGATGATAATGAGGTGGAGAGCGACCAGCAGAAGGGAAGAAAATTGTGGGGCTTAGTGGTTTGTCATCACACAACCCCTTGGTTTATCCCATTTCCTTTGCGATATGCTTGTGAGTTCTTGATTCAAGTTTTCGGTATTCAAATCAACAAAGAAGTTGAGTTGGCTGCTCAACTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGACGTCCCTGTGGGAATCATTACACAATCGCCTAATATAATGGATCTCGTCAAGTGTGATGGAGCCGCTCTTTATTACAAGAAGAAATTGTGGGTGCTAGGAGTTACTCCGGCCGAAGCACAAATTAGAGATATAGCTGATTGGCTTCTTCAGAATCATAGTGGGAGCACTGGGCTGAGTACGGATAGCCTCACGGAATCTGGCTACCCAGGTGCTTCTGATCTCGGCAATGAGGTATGTGGGATGGCTGCCATTAAAATCACAGCGAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCAAATGACAAGGACGATGGGCGGAAGATGCATCCAAGGTCGTCTTTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGGGGATCTCTACAGGACGAGATAGAGGACGACTCCAAAATGATTGTGAATGTTCCCTCAGCCGATGACACAATACAAAGTTTGGATGAATTGCGGGTTGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCTGTCCCCATCTTAGCTGTTGATTCCTCGGGCGTTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACAGGACTGCCAGTACAAGAAGCAATCGGCAGACTCTTTGTCGACGTTGTTGCTGATGAGTCGGTCGAGGTTGTGAAGAATATGCTTTCCTTGGCTCTTCAAGGTGATTCTGCTCTTATCTCTTATAAGCTTGCCTGA 2079 44.59 MSSKSTNKTNCSRSSSARSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSGSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALQKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSSLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEDDNEVESDQQKGRKLWGLVVCHHTTPWFIPFPLRYACEFLIQVFGIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIITQSPNIMDLVKCDGAALYYKKKLWVLGVTPAEAQIRDIADWLLQNHSGSTGLSTDSLTESGYPGASDLGNEVCGMAAIKITAKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEDDSKMIVNVPSADDTIQSLDELRVVTNEMVRLIETAAVPILAVDSSGVINGWNIKASELTGLPVQEAIGRLFVDVVADESVEVVKNMLSLALQGDSALISYKLA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6505500 6507578 + BLOR06837 Blo15g00443 70843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00443 692 SMART gaf_1 219 408 IPR003018 GO:0005515
Blo15g00443 692 SUPERFAMILY GAF domain-like 406 584 - -
Blo15g00443 692 Pfam GAF domain 220 398 IPR003018 GO:0005515
Blo15g00443 692 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Blo15g00443 692 PANTHER PHYTOCHROME C 1 682 - -
Blo15g00443 692 CDD PAS 624 682 IPR000014 -
Blo15g00443 692 Pfam PAS fold 616 684 IPR013767 GO:0006355
Blo15g00443 692 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 682 - -
Blo15g00443 692 TIGRFAM sensory_box: PAS domain S-box protein 620 688 IPR000014 -
Blo15g00443 692 Pfam PAS fold 70 186 IPR013654 GO:0006355
Blo15g00443 692 MobiDBLite consensus disorder prediction 1 26 - -
Blo15g00443 692 SMART pas_2 615 681 IPR000014 -
Blo15g00443 692 MobiDBLite consensus disorder prediction 1 27 - -
Blo15g00443 692 Gene3D PAS domain 76 322 - -
Blo15g00443 692 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 684 IPR035965 -
Blo15g00443 692 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Blo15g00443 692 Gene3D - 200 559 IPR029016 -
Blo15g00443 692 SUPERFAMILY GAF domain-like 199 395 - -
Blo15g00443 692 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Blo15g00443 692 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Blo15g00443 692 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Blo15g00443 692 Gene3D PAS domain 605 687 - -
Blo15g00443 692 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Blo15g00443 692 Gene3D - 403 576 IPR043150 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00443 Blo-Chr15:6505500 Blo18g00692 Blo-Chr18:15174709 0 dispersed
Blo15g00443 Blo-Chr15:6505500 Blo02g00140 Blo-Chr2:1219131 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00443 - - qsu:111989287 1162.9