Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00474 ATGCTCACAAAGGATCAGACGGCACCTGCAACAAGCGTGGCTGAAAAATTAAGTGGTTATGAAAGAGTACCTGCCAATGATGAGACAAGCTTGCAAGCTGGTGTGTCTCACCAACCCGTCTCTGCGCCCATTGATGCTGGTGGTTATGATATTCAGTTCTATTCAAAAGATGGAGCTGTTGGGAAGACGTGTATGCTTATCTCTTATACTAGCAATACTTTCCCGACGGATTATGTGCCGACTGTGTTTGACAATTTCAGCGCTAATGTGGTGGTAGATGGCAGTACTGTGAACCTTGGATTATGGGACACTGCTGGGCAGGAAGATTACAACAGGCTGAGGCCTCTTAGTTACAGAGGTGCAGATGTGTTCTTATTGGCATTCTCTCTAATCAGCAAAGCCAGCTACGAAAATATCTCTAAGAAGTGGATTCCTGAGCTGAGGCATTATGCCCCGACAATTCCAATTATACTGGTTGGAACAAAACTTGATTTAAGGGATGACAAGACATATTTGATCAATCATCCGGGTGCTACACCAATCACAACTGCTCAGAAGTTTAATGGTGTTTATGTTATGGGTCGTATGGATAACGTTCTTCAATTATTTGCTATTTTGCAGGGTGAAGAACTGAAGAGGGCCATTGGTGCAGCTTCATACATAGAATGCAGCTCCAAAACCCAACAGAATGTCAAGGCCGTTTTTGATGCGGCTATTAAGGTTGTTTTGCAGCCTCCTAAATTGAAGAAAAAGAGAAGGAAGACTAGGCAGTGTGCGTTTCTCTAA 786 43.51 MLTKDQTAPATSVAEKLSGYERVPANDETSLQAGVSHQPVSAPIDAGGYDIQFYSKDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTIPIILVGTKLDLRDDKTYLINHPGATPITTAQKFNGVYVMGRMDNVLQLFAILQGEELKRAIGAASYIECSSKTQQNVKAVFDAAIKVVLQPPKLKKKRRKTRQCAFL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7686524 7690807 - BLOR06868 Blo15g00474 70874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00474 261 Gene3D - 57 258 IPR027417 -
Blo15g00474 261 Pfam Ras family 57 243 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 CDD Rop_like 57 243 - -
Blo15g00474 261 SMART rho_sub_3 57 245 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 SMART ras_sub_4 57 245 - -
Blo15g00474 261 ProSiteProfiles small GTPase Rab1 family profile. 41 261 - -
Blo15g00474 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 243 IPR027417 -
Blo15g00474 261 PANTHER RHO FAMILY GTPASE 56 261 IPR003578 GO:0005525|GO:0007264
Blo15g00474 261 PANTHER RAC-LIKE GTP-BINDING PROTEIN 7 56 261 - -
Blo15g00474 261 ProSiteProfiles small GTPase Ras family profile. 42 261 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 TIGRFAM small_GTP: small GTP-binding protein domain 58 168 IPR005225 GO:0005525
Blo15g00474 261 MobiDBLite consensus disorder prediction 1 21 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 50 71 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 73 89 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 152 165 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 90 112 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 220 242 - -
Blo15g00474 261 SMART rab_sub_5 57 245 - -
Blo15g00474 261 ProSiteProfiles small GTPase Rho family profile. 42 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00474 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - qsu:112040065 315.849
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00497 Blo15g00474 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00876 Blo-Chr4:9826122 Blo15g00474 Blo-Chr15:7686524 2.14E-87 dispersed
Blo15g00474 Blo-Chr15:7686524 Blo18g00771 Blo-Chr18:21755109 1.31E-83 dispersed
Blo15g00474 Blo-Chr15:7686524 Blo16g00089 Blo-Chr16:2258854 1.61E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g187 . Blo15g00474 . Bda08g00984 Bpe07g00712 Bpe12g00129 . Bma12g00917 Cmo19g00763 Cmo11g01752 Cma02g00269 Cma20g00740 . Car20g00642 . Cpe04g00604 Cpe15g00605 . . . . . . . Cla02g00410 Cam02g0416 Cec02g0415 Cco02g0433 Clacu02g0419 Cmu02g0415 Cre02g0750 Cone12ag1243 Cone8ag1300 . . Lsi10g00506 Csa07g00117 Chy11g00244 Cme01g01240 . Blo13g00497 Bda15g01025 Bda14g00624 Bpe15g00803 Bpe05g00296 Bma03g00616 Bma08g00611 . Cmo02g00266 Cmo20g00737 Cma11g01366 Cma19g00750 . Car19g00585 Cpe16g00325 Cpe05g01363 . . . . . . . Cla02g01181 . Cec02g1269 . . . . Lsi11g01215 Csa02g01405 Chy01g00665 Cme11g00367
Vvi12g214 . Blo15g00474 Bda06g00382 . . . . . . . Cma02g00190 Cma20g00584 . Car20g00554 . . . . . . . . . . . . . . . . . . . . . . . Chy11g00655 . . . . . . . . . . Cmo02g00196 Cmo20g00650 . . . . Cpe16g00414 Cpe05g01422 Bhi10g01372 Tan05g0919 . . Hepe08g0432 . . . . . . . . . . . . Cme11g00857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00474 Blo_Chr15 FPKM 13.527892 10.587735 12.638525 11.292773 9.28124 9.600046 10.155167 9.3517 10.292954 10.331306