Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00571 ATGGAAGTGGTTGAAGTGAAAGGGACGGTGACATCACTGTCTTCGTTATTCCCTGTAGAAGACACACAGAAGGCAGCAAAACGCTTGCACGAGTCGCTTTCTGAGAAGAATCAGGAACTCGAACGTCTTCGAGGTTTCATCTCCGACAACACCAACCTCATCAACCTCGTCCAGAAGCTACCGGAAGAGCTCTACCACGACGTTATGGTACCTTTTGGGAAGGCAGCGTTTTTTCCGGGGCGGTTAATACACACCAATGAGTTTCTGGTTCTTTTAGGAGAAGGTTATCATGCCGAAAGAACATCAAAACAAACTGTGGAGATCTTGAAAAGAAGAGGAAAGTCTTTGGAGTCCCATGTTGATTCTCTTGAGGCAATGATTGAGGATCTGAAAGCTGAGGCTTCCTTTTTCAATGCAACTGCTTCTGAAGCGGTGGAAGGTCTTGTGGACATCAGAGAGGATTATGTGGAGGAAGAGTCCGCTAAGAGAGAATCTGAAATCGTGATCCATCTTGTCTTCTTGGCAGGCAATGAAAAAAATACTGATGATAAAGAGTATGCCCGAATCATGTCTAGGTTGGATGAACTTGAGAGAGAAGAACTTGCAGCTGGAAGTGACTCTGAGAACATTGAAGATGAGGAAAGTGAAGCTTTATTCGACAAATTGTCAGATCAGAAGCTTCTTGATGAAAATCGTAGCTTCTCAAAGATTGACACCTGCGAGTCAAGCAAACCTTCACAGAAAAAAGTGGACTCAAGAGGCAGAGCTGACTGTGTCCAAAATGAGGGCCAATATAAGCAGGATATTATTGACGAGTTTAATGTAAATTCATGTGACTTAGCAAATAGCAAAAGTTTGTTCAAAGTCGATGAGGTTAAGAAGCCAAATAGCGTAGAGAAAAATATTCAACCGCAGTCATCATCAAGCAATGAGATATTTGTTTTCTTCTCGGTTGTTGCTTTAATGGGATTTCTTGGTTCATCTATAGCTTATAAATTCTATGTGGGTGGTAAAGATGGTTGGGTTATGTACCCTTCTGAGGATTACAACCACTGGGCTGAAAGAAACAGGTTCCAAGTCAATGACACCCTCTTTTTCAAGTACAAATATGGGACTGACTCTGTTTTGGTTGTGAAGGAGGAAGATTATTTATCGTGTGACACAAGAAACCCACTTGTTTCTCTTACGGAAGGAGACTCCATTTTCAAGACCGATCGCTCTGGTCCGTTCTTTTTCATCAGTGGATATGCAGAGTGCTGTCATAAGGGTCAGAAGCTTCACATTGTAGTAATGGCGGAGAGGCACAAACATGTTGTTCCTCCTCCTCTTGCGTCGCCTCCTTCGGTACCGTCGCCACAAGCAGAGTTGCCGCCTGCTGAAAGTCCATCTGGTTTTGAAGGTCCGGCAGCTGCGCCGGCAAAGAATTCGGCGTTGCGTAGTAGGAGAGGTTCTGTTGGATTAGTGTTGGGAATTGGAGTCGTCTCTCTGTTTTTATGA 1497 43.89 MEVVEVKGTVTSLSSLFPVEDTQKAAKRLHESLSEKNQELERLRGFISDNTNLINLVQKLPEELYHDVMVPFGKAAFFPGRLIHTNEFLVLLGEGYHAERTSKQTVEILKRRGKSLESHVDSLEAMIEDLKAEASFFNATASEAVEGLVDIREDYVEEESAKRESEIVIHLVFLAGNEKNTDDKEYARIMSRLDELEREELAAGSDSENIEDEESEALFDKLSDQKLLDENRSFSKIDTCESSKPSQKKVDSRGRADCVQNEGQYKQDIIDEFNVNSCDLANSKSLFKVDEVKKPNSVEKNIQPQSSSSNEIFVFFSVVALMGFLGSSIAYKFYVGGKDGWVMYPSEDYNHWAERNRFQVNDTLFFKYKYGTDSVLVVKEEDYLSCDTRNPLVSLTEGDSIFKTDRSGPFFFISGYAECCHKGQKLHIVVMAERHKHVVPPPLASPPSVPSPQAELPPAESPSGFEGPAAAPAKNSALRSRRGSVGLVLGIGVVSLFL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11715158 11719984 - BLOR06965 Blo15g00571 70971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00571 498 PANTHER RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 1 308 - -
Blo15g00571 498 Coils Coil 113 140 - -
Blo15g00571 498 Pfam Plastocyanin-like domain 341 424 IPR003245 GO:0009055
Blo15g00571 498 Coils Coil 19 43 - -
Blo15g00571 498 MobiDBLite consensus disorder prediction 441 457 - -
Blo15g00571 498 Gene3D - 19 148 IPR009053 -
Blo15g00571 498 SUPERFAMILY Prefoldin 20 140 - -
Blo15g00571 498 CDD OsENODL1_like 331 431 IPR041846 -
Blo15g00571 498 ProSiteProfiles Phytocyanin domain profile. 331 432 IPR003245 GO:0009055
Blo15g00571 498 SUPERFAMILY Cupredoxins 330 431 IPR008972 -
Blo15g00571 498 Gene3D - 329 436 IPR008972 -
Blo15g00571 498 PANTHER UNCONVENTIONAL PREFOLDIN RPB5 INTERACTOR 1 1 308 - -
Blo15g00571 498 MobiDBLite consensus disorder prediction 441 473 - -
Blo15g00571 498 Coils Coil 179 213 - -
Blo15g00571 498 CDD Prefoldin_alpha 25 145 - -
Blo15g00571 498 Pfam Prefoldin subunit 30 144 IPR004127 -
Blo15g00571 498 TIGRFAM TIGR00293: prefoldin, alpha subunit 21 144 IPR004127 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00571 K17560 URI1; unconventional prefoldin RPB5 interactor 1 - mnt:21393625 290.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00465 Blo-Chr2:6583423 Blo15g00571 Blo-Chr15:11715158 1.40E-20 dispersed
Blo15g00571 Blo-Chr15:11715158 Blo17g00316 Blo-Chr17:3319782 1.41E-23 dispersed
Blo05g00377 Blo-Chr5:4527118 Blo15g00571 Blo-Chr15:11715158 9.66E-06 transposed
Blo06g00704 Blo-Chr6:30133492 Blo15g00571 Blo-Chr15:11715158 6.93E-27 transposed
Blo15g00571 Blo-Chr15:11715158 Blo02g00069 Blo-Chr2:468399 2.18E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008457 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00571 Blo_Chr15 FPKM 51.513439 58.087524 63.89426 66.649117 31.168686 28.424337 33.868134 59.664581 57.099907 69.442566