Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00575 ATGAGCAGTGTCTGCGACAGCTTTCACCAGTTTCTTCCATCTAAGAAAACCCTTCTGAAGGACATTAATATTCCACCCAGAAAGCTTCTTAACCGCCATGACGGTCCCGACTTCTTCTCTGATTCTCCGCGTTTCTTCTTTTCCAACGATACCCTTTTGCAGAAATTCTTACCCTGTAATAATGGAGACGACGACGGAGACGAAGACGATCCGTACTCCTCCGATTACTTTCGGATCTATGAATTCAAGGTGCGGCGGTGTACTCGGAGCCGGAGCCACGACTGGATGGACTGCCCGTTCGCTCACCCTGGAGAAAAAGCTCGTCGGAGAGATCCTCGCCTGTTTCACTACTCCGGCAAAGTATGCCCGGAATTTCGTCGGGGAGGGTGTAGCCGCGGCGATAGCTGTGAGTTCGCTCACGGGGTTTTCGAGTGCTGGCTTCATCCGACGAGGTACCGAACTGAAGCTTGTAAAGACGGGAAAAACTGTAAAAGAAAAGTTTGTTTCTTTGCCCATTCTCCTCGACAGCTTCGAATTTTTCCCGTAAAGTCGCCGGAATTTCAGATGAACAAGAAGAAGCGTCCGATCTCAGTATCTGGTTCGAACCACTGCTGTATGTTTTGTCATTGCGGAGCATCGTCTTCCCCAACCTCTCCTCTCTTAGGCATGTCTCATCTATCTCCGCCTCATTCGCCGCCACTATCGCCGGCCGAGCCTCAGTCGGTTAATACTTTTACTCCAAATTCGAGAAACAGTGAGGCTAAATTGACCGGAATGGTGCCGACGGAAATGATAAGCTCTCTGGAAGCGATGAGCTTGAACGAAGCGAATAAAACTTCCCCAGCTATACCACCGTCTCCGAGGTTCTCTAGGTCTATGAGTTATTTAAGCAGGAATCTCAATGATGAGAACAGCGTTAAGGGAGAAAATGGCGGATTTATCAATTCTGATCCCGATGTTGGGTGGGTCGATGAGTTATTGATGTAG 987 48.94 MSSVCDSFHQFLPSKKTLLKDINIPPRKLLNRHDGPDFFSDSPRFFFSNDTLLQKFLPCNNGDDDGDEDDPYSSDYFRIYEFKVRRCTRSRSHDWMDCPFAHPGEKARRRDPRLFHYSGKVCPEFRRGGCSRGDSCEFAHGVFECWLHPTRYRTEACKDGKNCKRKVCFFAHSPRQLRIFPVKSPEFQMNKKKRPISVSGSNHCCMFCHCGASSSPTSPLLGMSHLSPPHSPPLSPAEPQSVNTFTPNSRNSEAKLTGMVPTEMISSLEAMSLNEANKTSPAIPPSPRFSRSMSYLSRNLNDENSVKGENGGFINSDPDVGWVDELLM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11906893 11907879 - BLOR06969 Blo15g00575 70975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00575 328 MobiDBLite consensus disorder prediction 237 253 - -
Blo15g00575 328 PANTHER UNKEMPT FAMILY MEMBER 21 326 IPR045234 -
Blo15g00575 328 SUPERFAMILY CCCH zinc finger 115 145 IPR036855 GO:0046872
Blo15g00575 328 MobiDBLite consensus disorder prediction 221 253 - -
Blo15g00575 328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 21 326 - -
Blo15g00575 328 Gene3D - 116 179 - -
Blo15g00575 328 Pfam CCCH-type zinc finger 120 141 IPR041367 -
Blo15g00575 328 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Blo15g00575 328 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Blo15g00575 328 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g01039 Blo-Chr13:32736790 Blo15g00575 Blo-Chr15:11906893 3.74E-50 dispersed
Blo14g00534 Blo-Chr14:7801614 Blo15g00575 Blo-Chr15:11906893 5.28E-56 dispersed
Blo15g00575 Blo-Chr15:11906893 Blo09g00418 Blo-Chr9:15146487 1.94E-53 dispersed
Blo15g00575 Blo-Chr15:11906893 Blo02g00066 Blo-Chr2:452529 4.64E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13345 PF00642 zf-CCCH 1.10E-06 CL0537 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00575 K23047 - jre:108986638 359.762