Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00613 ATGGCATCTGCGTCTTTGAATAAGATTGAACGTGCTCACCAGATGTATAGAGAAGGCTATTACGATGAAGCTCTCCGATTTTATACAGAAGCCCTTGCCATGACTAAGACCAAGACCCAAAACATTGCCCTCCACAGCAATAGAGCTGCTTGTTATTTGAAACTTCACGATTTCAAGAAGGCTGCAGAAGAATGTACTTCAGTGCTCGAGCTCGATCATAAGCACACAGGAGCTTTAATGCTTAGAGCTCAGACTCTTGTTACCCTCAAGGAATATCAATCTGCACTTTTTGATGTGAACAGGCTTATGGAGTTGAATCCATCATCTGAAGTGTATCAAAATCTTCAAACCCGTTTGAAGACTCAATTGTCACTTGCTCCAATACCTGAATCTGAAGCAGAATTCGAAGGAGAAGAAGATGATGATACACATCTAAACACTTGTGAGGCAGACAAGGAGCAATCTGAAGTAAAAGCTGAGCTTCATATTAGCACCACTGATGCTGAATCTGTTGCCCCTACAAGACAGAGCAATGGATTGTTAGAAAAAGTGGTGGTTCAAAATGTCTCGTCCAAAATCACTACTATAAGTAATGGGCATGCAGCGCCAACACAGAGTGTGCAGGGTTCACTGGAGCGAGATCCCAATGGATGGTGTGCAATTCCGAAGCCAAAAGGGCACTCCACCTTAGATTATGGTCGGTGGGACAGGGTTGATGATGATTCTAGCGAAGAAGATGATGATGATGAAGAAGAGGATTCTCAACCTCAGTATCGCTTTCGTGTTAGAACAGTTGTAGATGAAATGCCTGGTCTGTATGAAGTTATTCTTTCGGCAGCTGAGAACACACGGGGAAGAAACGCAAACTTGGATGCTTCTAAGATACATATGGCTAGTTTTCTTCCTGGTGATTCAACCCTTCATGGAATGTATGAAGGTGGTTCTTCTTCTCAGGACAAGTCAGAAGATGGTGCTCGATGGTACTTTTCCCGGAAGGAAATTGAAGAAAGTTCGCCATCTAAACAAGATGGGATTGACTTGAAAAAGGAGAGTTATCTACGCAAGTCATATTGTACCTTTTTGCAAGATTTGGGAATGAGGCTTAAATTCTTGTTATGCAGACCTCAGGTAACAATTGCTACGGCTATAATTTTCTGCCACCGGTTTTTTCTTCGACAATCCCTTGCAAAGAACGATAGAAGGACCATTGCGACCATATGCATGTTTCTTGCTGGGAAAGTAGAAGAAACTCCGCGTCCTCTGAAAGATGTTATCCTTGTTTCATATGAGATTATACACAAAAAGGATGCAGCCGCAGTTCAAAAGATCAAGCAAAAGGAGGTGTATGAACAGCAAAAGGAATTAATCTTACTTGGAGAGAGACTTGTTCTTGCAACTCTTGGTTTTGATCTTAACGTGCACCATCCCTACAAGCCCCTCGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCCTTGCACAAGTAGCATGGAATTTTGTCAATGATGGATTGAGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCTGCTGGTGCCATTTTCCTTGCTGCTAAGTTCCTTAAAGTAAAGCTCCCGTCAGATGGGGAGAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGTCAGTTGGAGGAAGTTAGCAACCAGATGTTGGAACTGTATGAACAGAATCGAGTGCCACCTTCGAGTGAAGTTGATGGAAGTGCAATTGATGGATCTACTAATCGAATCTCTACTAAAGTTCCCATTAGCAGTGAAGAACACCTGCCAACACAAAATCATTCACAGGCTGGAGGTACTTGCTCCAGATCTGCAACTTCGAAGCCTGGATCGTCAAGGCCGGCATCTGAACAATCATGTAAAGATCTTCATAGTGAGCCTCAGCGACCCAACCGAAGTCAAAGTAGTGAAAACGGGAGTATGGAGATGAAACATTATGTGAACCTCAAAGAAGACAGTGATTCTAAACTAAATCCATATCATGAATCAGAGCCCTTGCCTTCTCAAGACATCATAGGTAAAGGTCAGAATTTGTCGAAGTTTCGGTCAGAGAGATTGGACGAACAAAATCAAGAAATCAGTTTGAGAACTAATGAAGCAAGAGAAGTAGTGGACTTCAAGGATAAACATGCAAGCCGAGGAGTGGAGGATAAAGATGGTGCAGTTCGTTGGTCGCCTCGGGAGGTAATAAAAAAGATTGATAAGGACAAGGTAAAGGCCGCATTGGAGAAACGAAGGAAGACCCTTGGTGGTGTCACTCGGAAAACAGAATCAATGGATGAAGATGATCTCATCGAGAGGGAGCTTGAAGCTGGCATCGAACTGGCTGCTGAAAGCGAGAAAAATAAGCGAGAGGTAAGGCAAGGTTGGGCTAAGTTGTCAAATAGACCAGAATATGAGGATTTGCATCAAGAAAGTGATAGAGACGAACGTGGCCAAGGAATGATAGGACAATCAAATTATGGACCAGATTTAAATAACATGGAAGAAGGGGAGTTATCAATAACTAATGATCCTGGCCTGGAATATCAGTCCCCAAAGTCAGGGAGCCGCAAACGAAAGGCTGGGAGCCCACCCGATAAAGTGTTTGAGGGGAAGCAGTGGCAAGATTCATTGGCTGCTTCTCACCGAGATAAGCATTCTGATTATATGGGAGATGGAAACAGTGTAGGTCGGGTTCGCCACGTCGACAGGGATCACAAGCGGCATGTTCAAGAAAATCATCTGAGTGGGAGTGATCTGATCTGGGAAGACACAATAAGAAAAGAACTGAACATTGATCTCAGTCCATTCCAGCCCACTTACCGATTTCATCTTCTTCGCCTACCGTCTGTCTCTGGTTCTGGAGTTGCCGAGAGGAAGGGGGTTTTCTCTTTCCAGATCGAGGGAGAAAAGGGTAGATCAGCCATGTCGCCCGGCAGCTTCAGGAGTGGTAGTCCGGATTTTAATTTACCCGACCAGATCTTGGCGGTGATTCCTACGGATCCTTACGACCAGCTCGATCTTGCCCGTAAGATCACGTCGATGGCGATTGCCTCTCGCGTATCCAAGCTCGAAGGTGAAATGCTTACCATGAAGCAGAGTCTATATGACAAGGACAGGGCTATATTTGACCTCCAGGAGAAGGTGTCTCACCTCGAACATGCCAACCAAGATGCTGAATCACGATTGAAGATCGCACTCGATGAGAATATGAGACTTTCCAGGGAAAGGGAATCATTAGCCATGACTGCGAAGAAACTTGGACGCGATTTGACAAAGTTGGAGACGTTTAAGAGGCAACTAATGCTGTCATTGAATGATGAAAATTCCTCCAATACTGAGACTGTTGATATTGGGACCTGCGATCAAGCTGCTCTCAAAGCATGTCCCGATAAGGCAACGAGGTATACTGGACAAGGATTTTCAATAACACCTTATATCACCCCAAGGCTGACACCAACTGGAACTCCAAAAGGTTTTTCTACTAGTGGTTCCCCTAGAGGGTATTATGCTGTGGCTTCTCCTCATATTACATCTGGTGCTACATCTCCAACAAAGATCTCCAATGAAGGACGGAATGTACTGTCTTCTTGGTATCCTTCAAGCCAGCAGTCATCTGCAGCAAGCTCGCCTACTCGTGGGCGTCCAATGACAGGGCGCACTGCTCGAGTTGATGGAAAGGAATTTTTTCGTCTAGCCAGGACCCGCCTGTCATATGAACAGTTCAGAGCATTCCTAGCTAATATCAAGGAACTAAATGCTCAAAAGCAAACTCGTGAGGAAACTTTGAGAAAGGCAGAAGAGATTTTTGGGACAGATAACAAAGATCTATTTCTATCATTTCAAGGGTTAATGGGGTTGTTTGGTGCTGCTCTGAATGTTCTGTCTGGGGCTCTCTTTGTTAAAAGAACGATCACAGTTTTGAGAAAAATAAGTTTTGGTTTGCCTAGGCTGCACTGCTCCATCAGTATTGCAGTGCTTTTGTAA 4002 44.2 MASASLNKIERAHQMYREGYYDEALRFYTEALAMTKTKTQNIALHSNRAACYLKLHDFKKAAEECTSVLELDHKHTGALMLRAQTLVTLKEYQSALFDVNRLMELNPSSEVYQNLQTRLKTQLSLAPIPESEAEFEGEEDDDTHLNTCEADKEQSEVKAELHISTTDAESVAPTRQSNGLLEKVVVQNVSSKITTISNGHAAPTQSVQGSLERDPNGWCAIPKPKGHSTLDYGRWDRVDDDSSEEDDDDEEEDSQPQYRFRVRTVVDEMPGLYEVILSAAENTRGRNANLDASKIHMASFLPGDSTLHGMYEGGSSSQDKSEDGARWYFSRKEIEESSPSKQDGIDLKKESYLRKSYCTFLQDLGMRLKFLLCRPQVTIATAIIFCHRFFLRQSLAKNDRRTIATICMFLAGKVEETPRPLKDVILVSYEIIHKKDAAAVQKIKQKEVYEQQKELILLGERLVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSSEVDGSAIDGSTNRISTKVPISSEEHLPTQNHSQAGGTCSRSATSKPGSSRPASEQSCKDLHSEPQRPNRSQSSENGSMEMKHYVNLKEDSDSKLNPYHESEPLPSQDIIGKGQNLSKFRSERLDEQNQEISLRTNEAREVVDFKDKHASRGVEDKDGAVRWSPREVIKKIDKDKVKAALEKRRKTLGGVTRKTESMDEDDLIERELEAGIELAAESEKNKREVRQGWAKLSNRPEYEDLHQESDRDERGQGMIGQSNYGPDLNNMEEGELSITNDPGLEYQSPKSGSRKRKAGSPPDKVFEGKQWQDSLAASHRDKHSDYMGDGNSVGRVRHVDRDHKRHVQENHLSGSDLIWEDTIRKELNIDLSPFQPTYRFHLLRLPSVSGSGVAERKGVFSFQIEGEKGRSAMSPGSFRSGSPDFNLPDQILAVIPTDPYDQLDLARKITSMAIASRVSKLEGEMLTMKQSLYDKDRAIFDLQEKVSHLEHANQDAESRLKIALDENMRLSRERESLAMTAKKLGRDLTKLETFKRQLMLSLNDENSSNTETVDIGTCDQAALKACPDKATRYTGQGFSITPYITPRLTPTGTPKGFSTSGSPRGYYAVASPHITSGATSPTKISNEGRNVLSSWYPSSQQSSAASSPTRGRPMTGRTARVDGKEFFRLARTRLSYEQFRAFLANIKELNAQKQTREETLRKAEEIFGTDNKDLFLSFQGLMGLFGAALNVLSGALFVKRTITVLRKISFGLPRLHCSISIAVLL 1333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14986763 15005054 - BLOR07007 Blo15g00613 71013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00613 1333 MobiDBLite consensus disorder prediction 786 823 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 1204 1226 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 1204 1221 - -
Blo15g00613 1333 Gene3D - 317 471 - -
Blo15g00613 1333 CDD CYCLIN 472 533 IPR013763 -
Blo15g00613 1333 CDD CYCLIN 353 428 IPR013763 -
Blo15g00613 1333 PANTHER - 298 825 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 830 855 - -
Blo15g00613 1333 Gene3D - 473 576 - -
Blo15g00613 1333 PANTHER CYCLIN 298 825 IPR043198 GO:0006357|GO:0016538
Blo15g00613 1333 MobiDBLite consensus disorder prediction 664 685 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 196 257 - -
Blo15g00613 1333 Coils Coil 1254 1274 - -
Blo15g00613 1333 SMART cyclin_7 478 563 IPR013763 -
Blo15g00613 1333 SMART cyclin_7 359 465 IPR013763 -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 566 629 - -
Blo15g00613 1333 SUPERFAMILY TPR-like 10 120 IPR011990 GO:0005515
Blo15g00613 1333 MobiDBLite consensus disorder prediction 196 212 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 786 901 - -
Blo15g00613 1333 Gene3D Tetratricopeptide repeat domain 4 131 IPR011990 GO:0005515
Blo15g00613 1333 SUPERFAMILY Cyclin-like 323 473 IPR036915 -
Blo15g00613 1333 Pfam Cyclin, N-terminal domain 328 472 IPR006671 -
Blo15g00613 1333 Coils Coil 1047 1081 - -
Blo15g00613 1333 SMART tpr_5 42 75 IPR019734 GO:0005515
Blo15g00613 1333 SMART tpr_5 76 109 IPR019734 GO:0005515
Blo15g00613 1333 MobiDBLite consensus disorder prediction 566 651 - -
Blo15g00613 1333 MobiDBLite consensus disorder prediction 882 901 - -
Blo15g00613 1333 SUPERFAMILY Cyclin-like 474 570 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00613 K15188 CCNT; cyclin T - vvi:100265067 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01215 Blo-Chr2:44122160 Blo15g00613 Blo-Chr15:14986763 7.17E-25 dispersed
Blo08g00237 Blo-Chr8:2935492 Blo15g00613 Blo-Chr15:14986763 0 dispersed
Blo10g00342 Blo-Chr10:5128501 Blo15g00613 Blo-Chr15:14986763 7.57E-37 dispersed
Blo12g00321 Blo-Chr12:18671811 Blo15g00613 Blo-Chr15:14986763 1.08E-59 dispersed
Blo15g00613 Blo-Chr15:14986763 Blo05g00412 Blo-Chr5:5234278 5.16E-08 dispersed
Blo15g00613 Blo-Chr15:14986763 Blo14g00615 Blo-Chr14:11110791 1.29E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1088 . . . . Bpe07g00463 . . . . . . . . . . . Cpe16g00716 . . . . . . . Cla02g01818 Cam02g1924 Cec02g1950 Cco02g1990 Clacu02g1905 Cmu02g1853 Cre02g2168 . . . . . . . Cme11g01602 Blo15g00613 . . . . . . Bma12g00591 Sed01g0755 . . . . . . . . Bhi10g00956 Tan05g0601 Cmetu11g1730 . Hepe08g0634 . . . . . . . . . . Csa06g01163 Chy11g01028 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00613 Blo_Chr15 FPKM 7.600307 8.853555 5.590424 5.812539 7.834285 8.001078 7.688428 9.409784 8.718293 7.798572