Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00626 ATGAATTCAGCGTGTAAGAGGCGAAGGACCGGGCTTGGTTCATCGAATCTATTTCTGCAGATTTCGTCCGTCGCTTTCCCTCTTTCTGACCAGATCTTTGTCAAAACCCTCAACGGTAAGACCATAACGCTCGAGGTTGAGAGCAGTGATAGCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTTCTCCTGATCAACAAAGATTGATATTTGCTGGTAAGCAGCTGGAAGATGGTCGAACACTGGCAGATTATAACATTCAAAAGGAGTCTACACTTCATTTGGTGTTGAGGCTCAGGGGAGGGACTATGATTAAGGTCAAGACTCTCACAGGGAAGGAAATTGAGATTGATATTGAGCCAACTGACACAATTGAACGCATCAAGGAGCGCGTTGAGGAGAAAGAGGGAATTCCTCCTGTGCAGCAAAGGCTTATATATGCGGGTAAACAGCTTGGAGATGACAAAACGGCCAAGGACTATAACATTGAAGTGGATCGTGTTAAAAGATATAACTTTGGAGATGTAACTCATTTGCTTCCTCCCTTCACACATCTATCAACAGATGGTGCTTATGCTGCTGTTCAATATATTGACATTATGACTTGTTATGAAGATGATAATATTGAAATAAGGGCATCAGATCTTGCTGAAGAGAAATCTAATGAAGAGGCTATTTCTCAACGTGAAAGTTCAACTTTCCAAGTGAATTCTGAGATAGGAGAAATAACAACTGAGTTATGTGATACACCATTCGGGTTGTCAAAAAAAGAACCTTCAGTGTTGATTAGACTTCGAAGGGAGATTGAAGAATGGGATGCAACCATCTCTAATTCCAAGAGGTACATGTTATTAAACACACTCATTGATTATTCTTCTAAAATTAGCTGGATTAAAAATTTTGGTCATTTTGACTTTGTTATACTGTTGCGGATTGGAAATTTCATTTATGCTGTTGTTTGTGAGCCCTCTTCACATATTGAAATGTCAAATGAGGTTGTTGACCTTTGCATGCTTAGTGGTACAACTATAGAGACACTAGTGACTAAAGAGCACCATGGTATTGAGCTTGATTTTCCAGTCGTTAAGAAAAGAGATTATCATAATTGGGATAAATGTCTAAATTTTGAGATTAATGATGCTTGCTTGATTTGTGAAAGAGTTGTTGTTGATTTGATGATGGAAGACATGTTGATGGGCAATCTTGATGTTTTGTTTGAGAACTATTGTGACCCTATTTTTCTACCCCCGCATGATTGTGTTCTTGCAAGTTATACATCCACTCCCATTGAGCACGCCCACCAAGAAAGGTAA 1323 39.23 MNSACKRRRTGLGSSNLFLQISSVAFPLSDQIFVKTLNGKTITLEVESSDSIDNVKAKIQDKEGISPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEVDRVKRYNFGDVTHLLPPFTHLSTDGAYAAVQYIDIMTCYEDDNIEIRASDLAEEKSNEEAISQRESSTFQVNSEIGEITTELCDTPFGLSKKEPSVLIRLRREIEEWDATISNSKRYMLLNTLIDYSSKISWIKNFGHFDFVILLRIGNFIYAVVCEPSSHIEMSNEVVDLCMLSGTTIETLVTKEHHGIELDFPVVKKRDYHNWDKCLNFEINDACLICERVVVDLMMEDMLMGNLDVLFENYCDPIFLPPHDCVLASYTSTPIEHAHQER 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15774894 15782330 + BLOR07020 Blo15g00626 71026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00626 440 PANTHER UBIQUITIN 31 174 - -
Blo15g00626 440 SUPERFAMILY Ubiquitin-like 31 105 IPR029071 -
Blo15g00626 440 Gene3D - 29 105 - -
Blo15g00626 440 PANTHER BNAA08G07930D PROTEIN 31 174 - -
Blo15g00626 440 PRINTS Ubiquitin signature 40 60 IPR019956 -
Blo15g00626 440 PRINTS Ubiquitin signature 61 81 IPR019956 -
Blo15g00626 440 PRINTS Ubiquitin signature 82 103 IPR019956 -
Blo15g00626 440 ProSiteProfiles Ubiquitin domain profile. 30 105 IPR000626 GO:0005515
Blo15g00626 440 CDD Ubl_ubiquitin 31 105 - -
Blo15g00626 440 CDD Ubl_NEDD8 108 167 IPR038738 -
Blo15g00626 440 ProSitePatterns Ubiquitin domain signature. 132 157 IPR019954 -
Blo15g00626 440 Pfam Ubiquitin family 32 103 IPR000626 GO:0005515
Blo15g00626 440 Pfam Ubiquitin family 108 167 IPR000626 GO:0005515
Blo15g00626 440 SUPERFAMILY Ubiquitin-like 108 167 IPR029071 -
Blo15g00626 440 SMART ubq_7 106 173 IPR000626 GO:0005515
Blo15g00626 440 SMART ubq_7 30 101 IPR000626 GO:0005515
Blo15g00626 440 Gene3D - 106 182 - -
Blo15g00626 440 ProSiteProfiles Ubiquitin domain profile. 106 167 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00626 K12158 NEDD8; ubiquitin-like protein Nedd8 - sspl:121782547 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01438 Blo-Chr3:40965481 Blo15g00626 Blo-Chr15:15774894 3.55E-41 dispersed
Blo10g00807 Blo-Chr10:25482066 Blo15g00626 Blo-Chr15:15774894 2.63E-39 dispersed
Blo11g00920 Blo-Chr11:19324130 Blo15g00626 Blo-Chr15:15774894 1.46E-17 dispersed
Blo15g00626 Blo-Chr15:15774894 Blo16g00412 Blo-Chr16:15775116 8.41E-145 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1111 . . . . Bpe07g00469 . Bma08g00816 . . . . . . . . . . . . . . . . . Cla02g01821 Cam02g1929 Cec02g1954 Cco02g1995 Clacu02g1910 Cmu02g1858 Cre02g2172 . . . . . . . Cme11g01623 Blo15g00626 . . . . . . Bma12g00587 Sed01g3461 . . . . . . . . Bhi10g00953 Tan05g0598 Cmetu11g0435 . Hepe08g0637 . . . . . . . . . . Csa06g01160 Chy11g01032 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000470 0 0 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00626 Blo_Chr15 FPKM 41.193516 42.544666 0.703369 0.918632 1.688583 1.723559 1.376439 22.042898 22.416229 16.932671