Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00635 ATGGTTACTGATAGGAAGGAGAGAACAGGTGTTGATCGGTTTTCACTCAGACAAGCTGTAATCTTCATCTGTGCAACCAATAGGCCAGATGAGTTGGACTTTGAATTTGTCCGTGCTGGACGTATTGACCGTCGATTGTACATAGGTTTACCTGATGCCAAGCAAAGGGAGGAAATTTTTGCCGTGCACAGCTCAGGAAAGCTACTCGGAGAGGATGTGCATTTTGGAAAGCTTGTTTTTCGAACAGTTGGTTTTTCTGGAGCAGATATTCAAAATCTTGTTAATGAGGCAGCGATAATGTCGGTAAGAAAAGGACATTCGAAAATTTACCAACAAGACATTGTTGATGTGTTAGATAAACAATTACTTGAGGGTATGGGTGTACTTCTCACTGAGGAAGAGCAACAGAAGTGTGAAGAAAGAGTGTCTTTTGATAAGAGGAAACTTCTGGCTGTACATGAAGCTGGTCACATACTATTAGCTCATCTGTTTCCTTGTTTTGACTGGCATGCATTTTCTCAGCTTCTGCCTGGAGGCAAGGAAACAGCAATATCAGTATTCTATCCTCGAGAAGATATGGTTGACCAAGGATATACTACCTTTGGTTATATGAAAATGCAAATGGTAGTTGCACATGGTGGTCGTTGTGCAGAGCGTATTGTGTTTGGGGATGACATTACTGATGGAGGAAGTGATGACCTAGAGAAAATAACAAAGATTGCTAGGGAGATGGTCATTAGTTCTCAAAATCGGAGACTGGGACTTACTGCATTAACCAAGAAGATTGGATTGATGGATCGACCAGATAATCCCGACGGAGAATTGATAAGATATAGGTGGGATGATCCGAATGTGATTCCTGCCAATATGACGATTGAAGTGTCTGAGCTATTTTCTCGAGAGTTGACTAGGTACATTGAAGAGACAGAAGAATTGGCTATAAATGGTTTGAGGGCCAACAGGCATATACTAGATATGCTTACAGAAGAATTGTTGGAAAAGTCTAGGATTACTGGATTGGAAGTTGAAGAGAAAATGAAGAGACGGAGTCCAATTATGTTTGAGGATTTTGTTAAGCCATTCCAGATAAATTTAGAACAGACACAGCAAATTTCACGGCCTCTTATGGCTAGAGACTGCGAGAAATTGCAGTCCCTAGAGCTATTCGTAGTCCCTGGTTTCTTCAACTCCCTCTCGACCACTTCCTCATTTCCATTGGGTAGAAATTTTCCAGGACGTCATCCAAGACCTGCATATCAATAA 1263 41.33 MVTDRKERTGVDRFSLRQAVIFICATNRPDELDFEFVRAGRIDRRLYIGLPDAKQREEIFAVHSSGKLLGEDVHFGKLVFRTVGFSGADIQNLVNEAAIMSVRKGHSKIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEERVSFDKRKLLAVHEAGHILLAHLFPCFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERIVFGDDITDGGSDDLEKITKIAREMVISSQNRRLGLTALTKKIGLMDRPDNPDGELIRYRWDDPNVIPANMTIEVSELFSRELTRYIEETEELAINGLRANRHILDMLTEELLEKSRITGLEVEEKMKRRSPIMFEDFVKPFQINLEQTQQISRPLMARDCEKLQSLELFVVPGFFNSLSTTSSFPLGRNFPGRHPRPAYQ 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16670171 16684389 + BLOR07029 Blo15g00635 71035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00635 420 Gene3D - 52 123 - -
Blo15g00635 420 SUPERFAMILY FtsH protease domain-like 145 356 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Blo15g00635 420 Pfam ATPase family associated with various cellular activities (AAA) 11 49 IPR003959 GO:0005524|GO:0016887
Blo15g00635 420 Pfam Peptidase family M41 143 343 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Blo15g00635 420 PANTHER ATP-DEPENDENT PROTEASE 10 370 - -
Blo15g00635 420 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 10 370 - -
Blo15g00635 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 124 IPR027417 -
Blo15g00635 420 Pfam AAA+ lid domain 72 114 IPR041569 -
Blo15g00635 420 Gene3D - 6 51 IPR027417 -
Blo15g00635 420 Gene3D Peptidase M41 135 351 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00635 K03798 ftsH, hflB; cell division protease FtsH [EC:3.4.24.-] - vvi:100244978 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00635 Blo-Chr15:16670171 Blo17g00712 Blo-Chr17:20497564 5.52E-52 dispersed
Blo15g00635 Blo-Chr15:16670171 Blo04g00702 Blo-Chr4:6440244 9.87E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01629 Blo15g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01039 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009820 1 2 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00635 Blo_Chr15 FPKM 33.732044 37.885452 122.981979 121.143135 7.69762 5.781345 6.764638 73.705956 81.216957 79.936264