Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00654 AGAGAAGCCGAGCGCAGGAAAATCCAGGAGCTCAAAACGAAGTCCACATCAGACAAGGGGCAATCGGGTCTTCTCCAATTTTGGTCTAGTACCTCCAAGATTCTCGAGACCGCTTTTAAGAAAGAAACTGTTGGATTGGTTACAAGAGAGCAATACGTTGAGAAGAGGGTAAACATTCGGAACAAAATTGAAGAGGAAGAGAAGGAAAAACTTCAAAAGCTGCAGCAAGAGGAGGAGGAGCTTCAGTTGCAGAAGAGGAAGAAAAGGAAGATAAAGGGTAATTCATGTTTGTCCTTTGCTGATTACATCAATAATGAAAGTGAAGAGGAAGAAGAGGGAATTAATTTAGAATCAAGGATGTTTGGTCATGGTAAATTTGGCAAAGATCCTACTGTAGAAACTAGCTTCCTGCCAGATAGGTTATATGAAAATTATTTTTCTCACGACTCTGGTGAGCCTCTTCAAATTACATACAGCTATTGGGATGGAACGAGGCATAGGCGTGTGATTCAAGTACGGAAAGGTGATTCAATAAGAGAGTTCCTTTGCTCTGTACAGCAGCAATTAGCACCTGAGTTTCGGGAGATTAAAACTACATCAGTGGAGAACTTGCTATATGTGAAAGAAGATCTCATAATACCAAATCATTTCCACTTTGATGTGCATGAAGACGTACGGACAATTGCTGATGCAACTATAGAATCACATGCAGGGAAAGTAGTAGAGATGCACTGGTATGAAAAGAACAAGCATATCTTTCCAGCTTCAAGATGGGAGATATATGACCCAACAAAGAAATGGGAACGGTACATGATCTACGGGGATTGA 828 40.82 REAERRKIQELKTKSTSDKGQSGLLQFWSSTSKILETAFKKETVGLVTREQYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRKKRKIKGNSCLSFADYINNESEEEEEGINLESRMFGHGKFGKDPTVETSFLPDRLYENYFSHDSGEPLQITYSYWDGTRHRRVIQVRKGDSIREFLCSVQQQLAPEFREIKTTSVENLLYVKEDLIIPNHFHFDVHEDVRTIADATIESHAGKVVEMHWYEKNKHIFPASRWEIYDPTKKWERYMIYGD 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18467517 18472712 + BLOR07048 Blo15g00654 71054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00654 275 PANTHER BNAA04G11980D PROTEIN 152 170 - -
Blo15g00654 275 PANTHER BNAA04G11980D PROTEIN 171 275 - -
Blo15g00654 275 PANTHER BNAA04G11980D PROTEIN 1 140 - -
Blo15g00654 275 PANTHER XAP-5 PROTEIN-RELATED 171 275 IPR007005 GO:0005634
Blo15g00654 275 PANTHER XAP-5 PROTEIN-RELATED 152 170 IPR007005 GO:0005634
Blo15g00654 275 PANTHER XAP-5 PROTEIN-RELATED 1 140 IPR007005 GO:0005634
Blo15g00654 275 Coils Coil 49 94 - -
Blo15g00654 275 Pfam XAP5, circadian clock regulator 65 219 IPR007005 GO:0005634
Blo15g00654 275 Pfam XAP5, circadian clock regulator 223 271 IPR007005 GO:0005634
Blo15g00654 275 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00654 K13119 FAM50, XAP5; protein FAM50 - pvy:116118188 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00156 Blo-Chr9:4675366 Blo15g00654 Blo-Chr15:18467517 2.55E-26 dispersed
Blo09g00157 Blo-Chr9:4692646 Blo15g00654 Blo-Chr15:18467517 2.56E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g112 . Blo15g00654 Bda06g00967 . Bpe07g00488 . . . . . Cma02g00328 Cma20g00769 Car02g00209 Car20g00672 . . . . . . . . . . . . . . . . . . . . . . . Chy11g00294 . . . . . . . . . . Cmo02g00323 Cmo20g00769 . . . . Cpe16g00297 Cpe05g01311 Bhi10g01890 . . . Hepe08g0944 . . Cla02g01112 Cam02g1184 . . Clacu02g1174 Cmu02g1135 . . Csa02g01355 . Cme11g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008443 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00654 Blo_Chr15 FPKM 4.092862 3.667803 4.725835 4.183521 4.096128 4.269901 4.638589 4.640746 4.884797 4.248439