Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00678 GTAAATAATAACTTTCTCTCAGTTGGCACCGCAAATAAGGAAATAACGGTATTAAATTTCAGCACTGGGAGGACCATTACTAAAATAAGTTTTGACAGTGAGGTTACCTCTATGGACCATGATCACACTGGTCATCTCATCTTCTGTGGAGATGCACTGGGATATATATATTCGTTGACTATGAATTCTCACACTGGAGGATTATCTCGTGTTCATCGTCATCGAAGTAGCAGTAGACGGAAATCTCCAGTCACAATGGTGCAGTATAGAAGCTTCTCTCTGCTTGCCCGTGGACCTGTATTGCTATCTTGCGCTCAAGATGGAAATTTGTCCTTTTTCAGCGTGGCTCTAGAAATTCACGGTTATTTGACGCTTCGCTGCTCACTCAAACTAACTCCAAGGATACACAGCATTCGAGCTTCCTTTTGCCCCTTGCTTTCTCTTGAGAAAGGAGAATACATAGGAAGTGAGGATACAAATGTCTACTTCTATGATCTGACTCGACCGAAGCATACTTGTGTCAACAAGCTTCAGGGTCATCGTTTCCCAGTGGTGGATGTGGCTTGGAATCATGGGGAGAATTTATTGGCATCATCTGATATTTATGGTACAGTGATTGTATGGAAGAGATCAAAGGCGAGT 642 42.52 VNNNFLSVGTANKEITVLNFSTGRTITKISFDSEVTSMDHDHTGHLIFCGDALGYIYSLTMNSHTGGLSRVHRHRSSSRRKSPVTMVQYRSFSLLARGPVLLSCAQDGNLSFFSVALEIHGYLTLRCSLKLTPRIHSIRASFCPLLSLEKGEYIGSEDTNVYFYDLTRPKHTCVNKLQGHRFPVVDVAWNHGENLLASSDIYGTVIVWKRSKAS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20766204 20769132 + BLOR07072 Blo15g00678 71078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00678 214 SMART WD40_4 65 114 IPR001680 GO:0005515
Blo15g00678 214 SMART WD40_4 170 209 IPR001680 GO:0005515
Blo15g00678 214 SMART WD40_4 22 58 IPR001680 GO:0005515
Blo15g00678 214 Pfam WD domain, G-beta repeat 173 209 IPR001680 GO:0005515
Blo15g00678 214 PANTHER WD REPEAT-CONTAINING PROTEIN 13 2 212 - -
Blo15g00678 214 PANTHER WD REPEAT PROTEIN 26-RELATED 2 212 - -
Blo15g00678 214 SUPERFAMILY WD40 repeat-like 2 209 IPR036322 GO:0005515
Blo15g00678 214 Gene3D - 153 214 IPR015943 GO:0005515
Blo15g00678 214 Gene3D - 1 127 IPR015943 GO:0005515
Blo15g00678 214 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 214 IPR001680 GO:0005515
Blo15g00678 214 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00678 K24739 WDR13; WD repeat-containing protein 13 - zju:107426743 373.244
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00678 Blo_Chr15 FPKM 6.559258 8.562437 5.65918 6.493836 9.815926 10.246028 9.202239 33.577686 33.338284 30.218794