Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00707 ATGTGCATAACGCATTGGCGTATCCTGCAATGCACCATGCATAACTACTTTATTTGCTCTTTCATTTATACTATTTTGTCTCAGGTTTTACCGGAGCTGCACCGGAGTTGGCAGTGCGGTGATTCATCCAAGTCATCTTTTTCACTTTTCCGTGGAGTATTGAATTCAATCATGGCGGGTGATTCACTGGTGGTTTCTAATGGCAATATCCACACACACTCTGATCCTCGCCGGACCTATCAAGTTGTTGTGGCTGCAACACCAAATATGGGCGTTGGTAAAAATGGGGTACTGCCTTGGAGGTTGCCTTCTGATCTCAAACTTTTTAAGAACCTAACTATGACTACATCAGATAGTGGGAAAAGAAATGCAGTTCTAATGGGTCGAAAAACATGGGAGAGTATTACCATTGATAATCGACCCCTGCCAGGTCGTCTCAATGTTGTTTTGACTCGTTCTGGTAGTTTTGACATTGCAACTGCTGAGAATGTCCTTATTTGTGGTAGCATCACTTCAGCTCTGGAACTTTTGGCGGCATCTCCTTATTGTTTGTCGATTGAGAAAGTGTTTGTTATAGGTGGAGGTGAGATATTAAGGGAAGCTCTGAATGCACCCGATTGTGATGCTATCCACATCACTGAAATTGAGACTAACATTGAATGTGATACCTTTATACCAAAGATTGATGTGTCTGTTTTTCAACCATGGTACTCGTCTTTCCCGATGGTGGAGAATAACATCCGTTCTTGCTTTACTACTTATGTTCGAGTGAGGAGTTCTGCAGTTGATCCCCTTAGTCAGAACAATGAAATGATCTCTGATAATAGGTTATTTTCTGATAAATTTGAGGTAAAGAAGTTCTCTTTCCTGCCAAAGAGCATCTTTGAGAAACACGAGGAGTACTTGTATTTAAGACTTGTCCAAGAAATAATTTCAGATGGCACTCTTAAGGATGATAGAACAGGAACTGGTACATCGTCCAAATTTGGTTGTCAGATGCGATTCAACCTGCGCAAAACTTTCCCATTGCTTACAACTAAGGCATTTTTTTGGCGTGGAGTTGTTGAAGAGCTTTTGTGGTTCATTAGTGGTTCAACCAATGCCAAGGTAATGCTGCTTTCAAAATCAATTTTAGTTTTTTTGTTGGAACTTACATATCTATCTATGTACTATTTCAGTATTGGTTTGGGAGACAGGGAGGAGGGTGACTTGGGACCTGTATATGGATTTCAGTGGAGACACTTTGGTGCTAGGTACACTGATATGCATGCTAACTATTCTGGTCAAGGATTTGATCAATTATTTGATGTTATCAGCAAGGTAAAATATAACCCAGATGACCGCCGAATTATTCTCTCTGCGTGGAATCCTTGTGATCTTAAATTGATGGCACTTCCACCTTGCCATATGTTTGCTCAGTTTTATGTAGCAAACGGGGAGTTGTCATGTCAAATGTATCAGCGATCTGCTGACATGGGTTTGGGTGTTCCCTTTAACATTGCATCATATTCTCTGCTGACTTGCATGATTGCTCATGTTAGCGATCTTGTACCTGGTGATTTTATTCATGTCATAGGCGATGCTCATGTTTATCACACACATGTGAGGCCGCTGCAGGAGCAGCTTCAGAAACTGCCCAAGCCATTCCCAATTCTGAAGATAAATCCTGAGAAAAAGAGCATAGACTCTTTTGTGGCAGCTGATTTCAGTCTCGTTGGTTATGATCCTCACGAGAAGATAAATATGAAAATGGCCGTGTAG 1761 41.17 MCITHWRILQCTMHNYFICSFIYTILSQVLPELHRSWQCGDSSKSSFSLFRGVLNSIMAGDSLVVSNGNIHTHSDPRRTYQVVVAATPNMGVGKNGVLPWRLPSDLKLFKNLTMTTSDSGKRNAVLMGRKTWESITIDNRPLPGRLNVVLTRSGSFDIATAENVLICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPDCDAIHITEIETNIECDTFIPKIDVSVFQPWYSSFPMVENNIRSCFTTYVRVRSSAVDPLSQNNEMISDNRLFSDKFEVKKFSFLPKSIFEKHEEYLYLRLVQEIISDGTLKDDRTGTGTSSKFGCQMRFNLRKTFPLLTTKAFFWRGVVEELLWFISGSTNAKVMLLSKSILVFLLELTYLSMYYFSIGLGDREEGDLGPVYGFQWRHFGARYTDMHANYSGQGFDQLFDVISKVKYNPDDRRIILSAWNPCDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAHVSDLVPGDFIHVIGDAHVYHTHVRPLQEQLQKLPKPFPILKINPEKKSIDSFVAADFSLVGYDPHEKINMKMAV 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 22540291 22543419 - BLOR07101 Blo15g00707 71107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00707 586 PRINTS Thymidylate synthase family signature 463 478 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 PRINTS Thymidylate synthase family signature 481 507 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 PRINTS Thymidylate synthase family signature 437 456 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 PRINTS Thymidylate synthase family signature 341 362 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 PRINTS Thymidylate synthase family signature 519 536 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 273 586 IPR036926 -
Blo15g00707 586 PANTHER THYMIDYLATE SYNTHASE 1 58 586 IPR045097 GO:0016741
Blo15g00707 586 PIRSF DHFR-TS 64 586 IPR012262 GO:0004146|GO:0004799|GO:0006730
Blo15g00707 586 TIGRFAM thym_sym: thymidylate synthase 399 586 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 Hamap Thymidylate synthase [thyA]. 300 586 IPR000398 GO:0004799|GO:0006231
Blo15g00707 586 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 58 586 - -
Blo15g00707 586 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 79 256 IPR001796 GO:0004146|GO:0046654
Blo15g00707 586 Pfam Dihydrofolate reductase 81 256 IPR001796 GO:0004146|GO:0046654
Blo15g00707 586 ProSitePatterns Thymidylate synthase active site. 448 476 IPR020940 GO:0004799|GO:0006231
Blo15g00707 586 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 292 586 IPR036926 -
Blo15g00707 586 Pfam Thymidylate synthase 303 586 IPR023451 -
Blo15g00707 586 SUPERFAMILY Dihydrofolate reductase-like 70 256 IPR024072 -
Blo15g00707 586 CDD TS_Pyrimidine_HMase 303 539 IPR023451 -
Blo15g00707 586 Gene3D Dihydrofolate Reductase, subunit A 62 250 IPR024072 -
Blo15g00707 586 CDD DHFR 83 255 IPR001796 GO:0004146|GO:0046654
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00707 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - twl:120013798 871.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00809 Blo15g00707 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00052 Blo-Chr3:1880023 Blo15g00707 Blo-Chr15:22540291 0 transposed
Blo15g00707 Blo-Chr15:22540291 Blo02g00809 Blo-Chr2:28313665 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00707 Blo_Chr15 FPKM 5.739561 6.205361 7.36659 6.824491 4.714359 4.054699 3.822129 12.005084 11.819503 13.873643