Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00708 GACCTGATTGTCATGGACATGAAGGGGTATGATGTTATCTTGAGTATTAATTCGTTATCCCAATACCAAGCGATGATCAATTGTAGAAAGAGAGAAGTACATTTTCTCTCCCCTGATGGAAAACAGCATACGTTTCTTGGAGTAAAGGAAAAAGGCAGATGGACTGTAATCTTTGTGCTTAAGGCAGACCGATTGATGAGAAATAGAGATGAGGGATTTCTCGTTAACGTATTAGACACAACGGTGGTATCAAAGACAAATCTGGATGAAATTCCCATTGTTCAAGACTTTTCGAAAGTTTTTCTGGACCGACTTCCTAGATTGCCTTCGGATCGTGAAATCAAGTTTGTGATTGACCTACACCCTGGAACAGAACCTATCTTGAAGAATCCATATAGAATGTTTCATCTTAGCTTTTCACCTTGGGCAACGCTAGTGCTATTTGTGAAGAAGAAAGATGGGTCGATGAGGATGTGCAACGACTATCGTGGGTTAAATAAAGTAACCATTAAGAATCGATACCCTCTACCAAGAATAAATGATTTGTTTGATCAATTACAAGGAGCTTTTTTCTTAATCCTAACTCTGCTCTGTGTTATTTCCATGGCTTCCTCTTCTGGGACATCTTCAGGTTCGTCACTGATGCAGACCTCTGGTTCAGAAGAAGCTATGGTGGATCAAAGAAAGAGAAAGCGGATGATATCAAACAGGGAATCTGCGAAGAGATCGAGGATGAGAAAACAGAAGCATTTAGATGATCTGACGGCTCAGGTTGCTCAGTTGAGGAAGGAGAATCACCAGATCATTTCCACCATGAATATTGTTACCCGGAATTTCTTGGCCATCGAAGGAGAAAACTCAATCCTCAGAGCTCAAATGGGTGAGCTAAGCCATAGATTAAGCTCTTTAAACGAGATCATCTCTTTCACAAATCAACATGACGGAGGCGCAGTCTATGGAAATGGAAATTATTCAGCCTCCTTCACTGACGCCATCGATGGATTTTTTAACCCCTTGAGTTTCCTTACCCAGCCAATAATGGCTTCTGCATCAGACATTTTTCAGTGTTGA 1071 40.99 DLIVMDMKGYDVILSINSLSQYQAMINCRKREVHFLSPDGKQHTFLGVKEKGRWTVIFVLKADRLMRNRDEGFLVNVLDTTVVSKTNLDEIPIVQDFSKVFLDRLPRLPSDREIKFVIDLHPGTEPILKNPYRMFHLSFSPWATLVLFVKKKDGSMRMCNDYRGLNKVTIKNRYPLPRINDLFDQLQGAFFLILTLLCVISMASSSGTSSGSSLMQTSGSEEAMVDQRKRKRMISNRESAKRSRMRKQKHLDDLTAQVAQLRKENHQIISTMNIVTRNFLAIEGENSILRAQMGELSHRLSSLNEIISFTNQHDGGAVYGNGNYSASFTDAIDGFFNPLSFLTQPIMASASDIFQC 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 22647720 22656685 + BLOR07102 Blo15g00708 71108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00708 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Blo15g00708 356 SUPERFAMILY DNA/RNA polymerases 93 191 IPR043502 -
Blo15g00708 356 CDD bZIP_plant_GBF1 229 279 IPR045314 GO:0003700|GO:0006355
Blo15g00708 356 Pfam bZIP transcription factor 228 273 IPR004827 GO:0003700|GO:0006355
Blo15g00708 356 PANTHER BZIP TRANSCRIPTION FACTOR 202 351 - -
Blo15g00708 356 MobiDBLite consensus disorder prediction 206 222 - -
Blo15g00708 356 MobiDBLite consensus disorder prediction 206 249 - -
Blo15g00708 356 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 135 208 - -
Blo15g00708 356 MobiDBLite consensus disorder prediction 223 249 - -
Blo15g00708 356 Gene3D - 226 279 - -
Blo15g00708 356 Pfam Retroviral aspartyl protease 1 37 - -
Blo15g00708 356 PANTHER BZIP TRANSCRIPTION FACTOR 44 202 351 - -
Blo15g00708 356 Coils Coil 244 271 - -
Blo15g00708 356 SUPERFAMILY Leucine zipper domain 228 279 IPR046347 GO:0003700|GO:0006355
Blo15g00708 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 231 246 IPR004827 GO:0003700|GO:0006355
Blo15g00708 356 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00708 - - K25786 thj:104810638 189.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00708 Blo-Chr15:22647720 Blo18g00802 Blo-Chr18:23408120 5.68E-48 dispersed
Blo15g00708 Blo-Chr15:22647720 Blo17g00775 Blo-Chr17:24759429 3.27E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g348 . Blo15g00708 . . Bpe07g00418 . . Bma12g00501 . . Cma02g00382 Cma20g00832 Car02g00247 Car20g00717 . . . . . . . . . . . . . . . . . . Cone12ag0777 Cone6ag1649 Cone9ag1573 Lsi10g00392 . Chy11g00361 . . . . . . . . . Sed05g3527 Cmo02g00388 Cmo20g00841 . . . . Cpe16g00257 Cpe05g01275 Bhi10g01980 Tan05g1278 Cmetu11g2335 . Hepe08g0998 . . . . . . . . . . Csa02g01282 . Cme11g00136
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011503 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13352 PF00170 bZIP_1 2.10E-11 CL0018 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00708 Blo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0