Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00712 ATGGATTTGCTGTCTCTAAGGGAGCATCATGCCCGAACACTACTTATTCATTATCGTTGGGATGTGGAGAATTTGTTTGCTGTCCTTGTTGAGAAAGGAAAATCCTCCTTATTTGCCGCTGCTGGTGTTCGCGTGTCTGAGCATCCAAATCTTGATGCATCAGCCTCTGCTTCTGCTCTGACCTGTGATGTCTGCATGGAGGAATTAGACAGTAAGAAAGCAACAGTGATGGATTGTGGCCATTGCTTCTGCAACGACTGTTGGACAGAGCATTTTATCGTTAAAATAAATGAAGGTCAAAGTCGGCGCATCAGGTGTATGTCATACAAGTGCAATGCTATCTGTGATGAATCTGCTGTTAGAAACCTAGTAAGTCAGAGGCACCCTGACCTTGCAGATAAATTTGATCGCTTTCTTCTTGAGTCTTATATTGAGGATAATAAAAAAGTTAAGTGGTGCCCAAGTACTCCTAATTGTGGTAATGCAATAAGAGTAGAGGATGATGAATTCTGCGAGGTAGAATGTTCGTGTGGTTTACAGTTTTGTTTTAGCTGCTTATCAGAAGCACATTCACCATGTTCGTGTTTGATGTGGGAGCTGTGGATAAAGAAATGTCGTGATGAATCTGAAACAGTTAATTGGATTACTGTTCATACAAAGCCTTGCCCGAAATGTCACAAACCTGTGGAGAAGAATGGTGGGTGCAATCTTGTTAGCTGCATTTGCGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGGGACCATACGTGGTCCAGCATCTCTGGTCACAGTTGTGGTCGTTATAAAGAGGAAACAGAAAAAAAAGCACAACAGGCAAAGAGAGATCTACTCTTTCGATCAAGACGGGTCCTCTCATACTCATACCCATTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAGGATGAGATGACAAACGAGGGACGGGAAATCAAACAGAATTTATTTGAGGACCAGCAACAGCAGCTTGAAGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAAGAGCCCTTTGATCAATATTTTGAAGAACGGGTAATGGAGACAAGGATGCAAGTTATCAATTTGTCAGTAATAACGGATACCCTCTGTAAGAAAATGTATGAATGCATCGAGAATGACTTATTGGGTTTTGTCAACCTTGGTAATCACAATATTGCTCCATACAAGTCAAAAGGAATCGAGAAGGCATTGGATTTTTATGCATGTTGGAACGATAGCACAAATAAGGCTGATAAACATCTGGCATCGGGCTGTGGCACTAGTGGTAGATTGGATGAAACATCAGAACTTGATAGACCCTCGGGCTCCGGCAATTCAGATGAGAGCGGGTGCTCTTCTCGGAAGCGGGCCAGAAAGGGAAGTGTTGGAGGCAGCTTCTTTGATCTGAACTTACCTGCAGAGGCCTGGGCTGTTGGCTGGGTGCGGGGAAGTATGGAAGAAGAAGGTATTGGTATGGTTTTGGCCAAAGCTATGGAGCTGAGGTTGAAGATCAGCAACTGTATTCACAATGCGACTGCGACGACGATCGATTCACGAGCGCACGACCCGTTGGCGAAAAAGCAAGATGAGGCCGAAGGCGATGGAGGTTCTGGTTCGCGAAGCACTGTGTCTGAAGTTGGAGAAGCAAAGGAAGATGAAGAAGCGGAGAGGCTTCTGAATATATGCGATGCCCTTGAGTCTCTTGAGACTCAGCTCGCTTCGTTGCAGGCTTTGCAACAGCAACAACGATATGAAAGAGAAGCAGCCCTTTCAGAGATTGAGCACAGCCGGAAAATGTTACTGGATAAGCTCAAAGAGTACAAGGGGGAGGATTTGGAAGTTATACAAGAGGCTTCTGCTTTTGCTGCTGAGTCAGTGGAGCATAATCATGATCTTATGCTTCCTCCATACCCAATTTGTCCTCCACATTCTATTAGACTTGAAAATGGCTATTTGACCCGTAAATCTTTACGAAATGGGTTAACCTCGAGCTTCCCTTCAAATGAAGCGAAGAAGGAAATGAGTGAGTCATTTACAAATCATAAACAGACCGAGTCCAAAAAAGCGAGAAGCGGAGTTGGATCATTCGCAAGTGCTGCAGCGAAAACAGTGTTTACCGTCATCGGAGTGGTATCGATATTATGTTTATCTGGTTTTGGACAAGAGTTTGCGAAAAGATCTATATCTTTGAGGGCGTTGGACATGTTCAAACAGCCGAAGAAGGAAGAATTGGGCATGATTTCTGGATGCCCTCCAGGCAAAGTTCTTGTAGTGGCAGATGGTGAAGCTCGGTGCGTCGTGAAAGAGAGAATTGAAATTCCATTTTCTTCCGTTGTTGCAAAACCAGATGTGAACTATGGATGTGGTTGA 2382 44.12 MDLLSLREHHARTLLIHYRWDVENLFAVLVEKGKSSLFAAAGVRVSEHPNLDASASASALTCDVCMEELDSKKATVMDCGHCFCNDCWTEHFIVKINEGQSRRIRCMSYKCNAICDESAVRNLVSQRHPDLADKFDRFLLESYIEDNKKVKWCPSTPNCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEETEKKAQQAKRDLLFRSRRVLSYSYPFAFYMFGDELFKDEMTNEGREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQYFEERVMETRMQVINLSVITDTLCKKMYECIENDLLGFVNLGNHNIAPYKSKGIEKALDFYACWNDSTNKADKHLASGCGTSGRLDETSELDRPSGSGNSDESGCSSRKRARKGSVGGSFFDLNLPAEAWAVGWVRGSMEEEGIGMVLAKAMELRLKISNCIHNATATTIDSRAHDPLAKKQDEAEGDGGSGSRSTVSEVGEAKEDEEAERLLNICDALESLETQLASLQALQQQQRYEREAALSEIEHSRKMLLDKLKEYKGEDLEVIQEASAFAAESVEHNHDLMLPPYPICPPHSIRLENGYLTRKSLRNGLTSSFPSNEAKKEMSESFTNHKQTESKKARSGVGSFASAAAKTVFTVIGVVSILCLSGFGQEFAKRSISLRALDMFKQPKKEELGMISGCPPGKVLVVADGEARCVVKERIEIPFSSVVAKPDVNYGCG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 23101189 23112084 + BLOR07106 Blo15g00712 71112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00712 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 147 IPR013083 -
Blo15g00712 793 Pfam Ariadne domain 287 479 IPR045840 -
Blo15g00712 793 Gene3D - 285 386 - -
Blo15g00712 793 Gene3D - 191 284 - -
Blo15g00712 793 SMART ibrneu5 133 195 IPR002867 -
Blo15g00712 793 SMART ibrneu5 203 268 IPR002867 -
Blo15g00712 793 SUPERFAMILY RING/U-box 203 269 - -
Blo15g00712 793 SUPERFAMILY RING/U-box 133 202 - -
Blo15g00712 793 ProSiteProfiles Zinc finger RING-type profile. 62 106 IPR001841 -
Blo15g00712 793 Coils Coil 569 589 - -
Blo15g00712 793 ProSiteProfiles TRIAD supradomain profile. 58 272 IPR044066 -
Blo15g00712 793 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 286 IPR031127 GO:0004842|GO:0016567
Blo15g00712 793 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 287 403 IPR031127 GO:0004842|GO:0016567
Blo15g00712 793 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 286 - -
Blo15g00712 793 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 287 403 - -
Blo15g00712 793 Coils Coil 594 614 - -
Blo15g00712 793 Pfam IBR domain, a half RING-finger domain 134 195 IPR002867 -
Blo15g00712 793 MobiDBLite consensus disorder prediction 666 690 - -
Blo15g00712 793 MobiDBLite consensus disorder prediction 523 556 - -
Blo15g00712 793 MobiDBLite consensus disorder prediction 524 538 - -
Blo15g00712 793 SUPERFAMILY RING/U-box 58 145 - -
Blo15g00712 793 MobiDBLite consensus disorder prediction 433 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00712 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 800.431
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00793 Blo15g00712 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00793 Blo-Chr2:26821353 Blo15g00712 Blo-Chr15:23101189 2.27E-149 dispersed
Blo07g00352 Blo-Chr7:5609626 Blo15g00712 Blo-Chr15:23101189 4.89E-07 dispersed
Blo15g00712 Blo-Chr15:23101189 Blo18g00504 Blo-Chr18:6355363 5.02E-42 dispersed
Blo15g00712 Blo-Chr15:23101189 Blo17g00514 Blo-Chr17:8162243 6.54E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00712 BCT 107 478 ARIADNE family AT4G34370 62.1 2.1e-147 519.2
Blo15g00712 BCT 1 434 ARIADNE family AT2G16090 66.7 1.9e-189 659.1
Blo15g00712 BCT 1 412 ARIADNE family AT3G27710 57.7 1.3e-154 543.5
Blo17g00514 . 9 545 ARIADNE family AT1G05890 63.5 1.8e-218 755.7
Blo01g00201 . 196 671 ARIADNE family AT1G05890 71.7 6.4e-216 747.3
Blo18g00504 . 67 465 ARIADNE family AT1G05890 74.9 3.8e-192 668.3
Blo17g00514 . 18 540 ARIADNE family AT1G65430 78.2 8.2e-253 869.8
Blo01g00201 . 183 724 ARIADNE family AT1G65430 68.0 1.5e-230 795.8
Blo18g00504 . 67 468 ARIADNE family AT1G65430 81.1 5.6e-209 724.2
Blo17g00514 . 11 453 ARIADNE family AT2G31780 53.6 1.7e-144 509.6
Blo01g00201 . 139 587 ARIADNE family AT2G31780 55.9 5.4e-143 504.6
Blo18g00504 . 68 384 ARIADNE family AT2G31780 58.2 7.1e-119 424.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00712 Blo_Chr15 FPKM 9.158634 8.938837 8.651834 7.419738 9.058457 10.345133 8.120061 9.389544 8.780457 9.266546