Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00732 ATGTATGCACTTATCAAGGTGGAGGCTCAGCCACTAGCAAGAAAAGTGGTTGCAGCAAGGCCAGAAGGTAGAAGTGGAAGTGGCAAACGAGGAAGCTCACAAGACATATTTATGGGTTTTACCACTGCTGTCAGGATGCAAGACACCATCATCTTTCGCAAGAAATATCCATTGTTTATGAGGATGATCGTCTTGGCGTTTTCATTGGTCTGTGGTTTGTATATGTGGTCAGTTTGTTTCAAGCAAATTAGCAACCGGTCCATGGCTGGGTTTTTGAATGTTCAGGTTATTCAAATGCCATGTACAAAACCACAAATTGAACCCTCGGAAGTTCCTTATGTGCATTTTCCAGAACCACATACATATAGCAGGGCTGAGTGTGCTTGCAATCCTGTTAGAAATTTTGCAATTTTTTCGATGCAAAGATCTGGGAGTGGATGGTTTGAGACATTATTGAATAATCATACTAACATAAGTTCAAATGGGGAGATATTCTCTGTTAAAGTGAGGAGAATTAATGTTTCAACTATCATTGAAACTTTAGATAAGATTTACAATCTTGACTGGTTGAGTAGCGCCTCAAAAAATGAGTGCACTGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGTATAATGCAACACCATGAAGAAATAGCGGAGTACTTGAGAAATCAAGGGGTGTCGATAATTTTCCTCTTCCGAAGAAATCTCCTTCGCAGAATGGTATCGGTGCTTGCAAATTCTTATGATAAGGACAATAAGCTCTTAAATGGAACCCACAAGTCTCATGTACATTCATCCCACGAGGCAGCAATACTTGCCAAATACAAGCCTACTATAAACGCCACGATGTTGATTTCGGATTTGAGACAGATTGAAGAGGCGACTGTTAAAGCATTGGAGTATTACAAGAGCACCCGACACATAATTTTATATTACGAGGATATTGTCATGAACCGAAATAAAATAATGCAAGTACAAGATTTTCTGAAGGTTCCGAGAAGCGATTTAAAGAGCCGTCAATTGAAGATTCACAAAGGGTCTTTGTCGAAACTGGTCGAAAATTGGGACCAAGTGAAGACGGCTCTCCGGGGGACACCATACGAACGCTTTTTGGACCAAGCCTCTCGTCCTTCTGCTACTCGCCCAAGAAGTCTGAAGAGACAGAGACAGAAGGAGAGGGAGCTGAAGAAGACGATGGCGCAGCCGACGAATGGTGCTGATCTGAATCCACCTCCGCATCAGCATCAACAGTGGACGCAGCCGCATCAATATCAGCAGCAGTGGATGGCTATGCAGCATCCTGCGGCGGCCATGGCTATGATGCAGCAGCAGATGATGATGTACCCTACGCAGCATTATATGGGCTACTCGCATTACCCGTATCAGCAGCAAGCTCAGCTTCAACAACAGCAAAAACAACAGGCTCAGAGGCAGGCTTCAGCAGACGAAGTTAAGACGATCTGGGTCGGCGACCTTCATCATTGGATGGATGAGAACTACCTCCATAGCTGCTTCGCTTACACCGGCGAGGCTTTTCGACTACATAAATTTAGAACAAGGGTTTTTGGTAAAATTGAGGGTAAAGTCTCATCTGTTAAGGTTATACGCAATAAACAGACTGGACAGTCTGAAGGCTATGGGTTTATTGAGTTTTATTCACACCCAACTGCTGAGAAAGTTCTGCAGAACTATAATGGAGCTATAATGCCAAATACGGAGCAGCCTTTTCATCTTAACTGGGCAACCTTTAGTTCAAATGATAAGAGAATAGACAGTAGCTCTGATTTGTCCATATTTGTTGGTGATTTGGCCACAGATGTTACAGATTCTATGTTGCAAGAAACTTTTGGGAGTAGATATCCATCCGTGAAGGGAGCAAAAGTTGTGATTGATGCAAACACGGGCCGCTCTAAAGGTTATGGATTTGTCAGGTTTAGTGATGAAAATGAGAGATCAAGGGCGATGACTGAGATGAATGGAGTGCATTGTTCGAGTAGGCCGATGCGTATTGGTGTTGCCACTCCAAAGAAAGCAGCTGGCTACCAGCAAAATTATTCTTCACAAGTTCAGTTCCTATCATTGGTATCAGAGCTAGCCCATGTTCGATTGTGGAATACCGACGCCGGGAGACCGTGTCAGGCCCTAAGGGGGGTGGACTGTCATGTGGTTTATGGGCGAGATCCTCCTCCATTAATCCGCTATGGTGTCAGCCCTTCTCCGGTTTCATCCGTCGATTCTCTCCTTCGAGATCATGATGCGATCTTAGACGAATTAAAGTATCACCTCGGCCGGGCCCAGTCAAAGATGAAAAACGCAGCAGATAGTCATCGGCGTGACGTCACATTTGAGAAAAATGATCTTTTTTTTCTCAAATTACAACCTTACCCTTTGGTTTTGGCTGGTGGACATGGATTAAATGATTCTGCCACTCAAGGTTCTCAATATGACAGCGAAGCAAATACTACAACTATATTTGTTGGAGGGCTTGATTCAGATGTTAATGATGAAGATCTCAGACAGCCATTCTCTCAATTTGGTGAGGTTGTCTCTGTGAAAATACCTGCTGGAAAAGGATGTGGGTTCGTTCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATGCAAGGTTTGAATGGAACCATAATTGCTCACCCACTGAACAGAACAGAACTACGTTCTGTTCGCTCGCCGGAATCGGAAGAATGGCGAGGTGGAGCTTCTGTCGTCGGTGGTCAGAATACTCGTCGCCAAACGGAAAGCACGAACCGTCCGGAATCCTTTAGATCGACTGCTGTAAATCCAATCACAATCAACCAACGACATCATAAATCCAAACTTAACATCGGAGTAAAACTCAGATCGAAACCTCACCCATTGAACAGAGTCGGAATTGTTCGCCGCCGGAATCGAAAAACGGATTCGGCCTCGAAGCTCCTTGCTCTGGCCAACACCCCGTTGCACAGGGTGTCCCTGACCACCGTCCGAACCGCCTCAGACGGAGACGCTCCGCCACTTAACGGAGCTCGCGAACGTCGGAATCGCCGTCTCCGCTTCGGCCTACATCTTGACGGCGTGGTTCGCAGCTCGGGAGCGCTGGACAGAGTCACTCGCCGCTGCACGGAGCTCGCCGGTCGTCGCCTCGTCTCAGTCGAACGTCGTCGCTCCAGCTCTCGCTCGGGCTCGTCGGTCGGGATCGAGGTCGCTCCCTCCTTCGGTTTCTCTCCATCGGCAAGAGGCGTGATTTTGGGGGAAGAGGGAAACTAG 3270 46.18 MYALIKVEAQPLARKVVAARPEGRSGSGKRGSSQDIFMGFTTAVRMQDTIIFRKKYPLFMRMIVLAFSLVCGLYMWSVCFKQISNRSMAGFLNVQVIQMPCTKPQIEPSEVPYVHFPEPHTYSRAECACNPVRNFAIFSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRINVSTIIETLDKIYNLDWLSSASKNECTAAVGLKWMLNQGIMQHHEEIAEYLRNQGVSIIFLFRRNLLRRMVSVLANSYDKDNKLLNGTHKSHVHSSHEAAILAKYKPTINATMLISDLRQIEEATVKALEYYKSTRHIILYYEDIVMNRNKIMQVQDFLKVPRSDLKSRQLKIHKGSLSKLVENWDQVKTALRGTPYERFLDQASRPSATRPRSLKRQRQKERELKKTMAQPTNGADLNPPPHQHQQWTQPHQYQQQWMAMQHPAAAMAMMQQQMMMYPTQHYMGYSHYPYQQQAQLQQQQKQQAQRQASADEVKTIWVGDLHHWMDENYLHSCFAYTGEAFRLHKFRTRVFGKIEGKVSSVKVIRNKQTGQSEGYGFIEFYSHPTAEKVLQNYNGAIMPNTEQPFHLNWATFSSNDKRIDSSSDLSIFVGDLATDVTDSMLQETFGSRYPSVKGAKVVIDANTGRSKGYGFVRFSDENERSRAMTEMNGVHCSSRPMRIGVATPKKAAGYQQNYSSQVQFLSLVSELAHVRLWNTDAGRPCQALRGVDCHVVYGRDPPPLIRYGVSPSPVSSVDSLLRDHDAILDELKYHLGRAQSKMKNAADSHRRDVTFEKNDLFFLKLQPYPLVLAGGHGLNDSATQGSQYDSEANTTTIFVGGLDSDVNDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFANRKNAEDAMQGLNGTIIAHPLNRTELRSVRSPESEEWRGGASVVGGQNTRRQTESTNRPESFRSTAVNPITINQRHHKSKLNIGVKLRSKPHPLNRVGIVRRRNRKTDSASKLLALANTPLHRVSLTTVRTASDGDAPPLNGARERRNRRLRFGLHLDGVVRSSGALDRVTRRCTELAGRRLVSVERRRSSSRSGSSVGIEVAPSFGFSPSARGVILGEEGN 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 24275487 24302501 - BLOR07126 Blo15g00732 71132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00732 1089 MobiDBLite consensus disorder prediction 370 423 - -
Blo15g00732 1089 CDD RRM2_SECp43_like 597 676 - -
Blo15g00732 1089 SUPERFAMILY RNA-binding domain, RBD 580 690 IPR035979 GO:0003676
Blo15g00732 1089 SUPERFAMILY RNA-binding domain, RBD 817 914 IPR035979 GO:0003676
Blo15g00732 1089 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 824 903 IPR000504 GO:0003723
Blo15g00732 1089 SUPERFAMILY RNA-binding domain, RBD 450 589 IPR035979 GO:0003676
Blo15g00732 1089 CDD RRM1_SECp43_like 488 586 - -
Blo15g00732 1089 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 826 884 IPR000504 GO:0003723
Blo15g00732 1089 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 575 IPR000504 GO:0003723
Blo15g00732 1089 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 600 666 IPR000504 GO:0003723
Blo15g00732 1089 Gene3D - 444 590 IPR012677 -
Blo15g00732 1089 Gene3D - 591 690 IPR012677 -
Blo15g00732 1089 Pfam Sulfotransferase domain 136 359 IPR000863 GO:0008146
Blo15g00732 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 248 IPR027417 -
Blo15g00732 1089 MobiDBLite consensus disorder prediction 912 929 - -
Blo15g00732 1089 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 802 922 - -
Blo15g00732 1089 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 416 694 - -
Blo15g00732 1089 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 598 677 IPR000504 GO:0003723
Blo15g00732 1089 SMART rrm1_1 488 581 IPR000504 GO:0003723
Blo15g00732 1089 SMART rrm1_1 599 673 IPR000504 GO:0003723
Blo15g00732 1089 SMART rrm1_1 825 891 IPR000504 GO:0003723
Blo15g00732 1089 MobiDBLite consensus disorder prediction 895 929 - -
Blo15g00732 1089 Gene3D - 807 930 IPR012677 -
Blo15g00732 1089 MobiDBLite consensus disorder prediction 404 423 - -
Blo15g00732 1089 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 487 585 IPR000504 GO:0003723
Blo15g00732 1089 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 802 922 - -
Blo15g00732 1089 Gene3D - 132 363 IPR027417 -
Blo15g00732 1089 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 416 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00732 - - - egr:104418753 509.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00571 Blo15g00732 CCT
Blo13g00571 Blo15g00732 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00824 Blo-Chr10:26079596 Blo15g00732 Blo-Chr15:24275487 2.56E-101 dispersed
Blo12g00945 Blo-Chr12:27591699 Blo15g00732 Blo-Chr15:24275487 2.39E-09 dispersed
Blo14g00281 Blo-Chr14:2796067 Blo15g00732 Blo-Chr15:24275487 4.97E-18 dispersed
Blo01g01174 Blo-Chr1:43184168 Blo15g00732 Blo-Chr15:24275487 2.66E-79 transposed
Blo13g00571 Blo-Chr13:27821133 Blo15g00732 Blo-Chr15:24275487 3.25E-163 wgd
Blo15g00732 Blo-Chr15:24275487 Blo02g00819 Blo-Chr2:29104384 1.10E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g446 . Blo15g00732 Bda06g01046 Bda08g00847 Bpe07g00394 Bpe12g00059 . Bma12g00468 Cmo19g00632 Cmo11g01351 . . . . Sed10g2042 Cpe04g00271 Cpe15g00497 Bhi05g01131 Tan02g0894 Cmetu01g2176 . Hepe02g0576 . . Cla02g00588 Cam02g0620 Cec02g0619 Cco02g0636 Clacu02g0618 Cmu02g0613 Cre02g0944 Cone12ag1104 Cone8ag1144 . . . Csa07g00771 . Cme01g00038 . Blo13g00571 Bda15g00032 . . . . Bma08g00797 . . . Cma11g01761 Cma19g00613 . Car19g00466 . . . . . . . . . . . . . . . . Lsi11g01019 . Chy01g00044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019420 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00732 Blo_Chr15 FPKM 27.030836 28.657169 19.164862 20.742649 11.938517 10.314815 12.03982 25.680601 26.611525 28.747149