Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00744 ATGAGGGTCTTCGCCTCCCCGGCCGTTGCGGTGGCAGCGGCGGGGGAGGAGGTTGACCAGACGAGGCTGGAGCCGAGAGTAGAGGAGAGAGATGGGTATTGGGTGCTGAAGGAGAAGTTCAGAGAGGGTATTAATCCTCAGGAAAAGGTGAAAATAGAGAAAGAGCCAATGAAGCTTTTCATGGAAGGTGGGATCGAAGATCTGGCCAAATTGTCCATGGGAGAAATCGACAAAGCTAAAACTACTAAGGATGATATTGATGTCAGACTCAAATGGTTGGGCCTGTTCCATAGAAGGAAACATCAATATGGCACATTCATGATGAGACTGAAGCTGCCAAATGGCGTGACAACAAGCGAACAGACAAGATACTTAGCGAGTGTGATCCGGAAATACGGAAAAGAGGGCTGTGCCGATGTGACAACCAGACAAAATTGGCAAATCCGGGGAGTTGTGCTACCGGATGTGCCTGAAATCTTAAAGGGTCTGGTAAAAGTCGGCTTGACAAGCCTGCAGAGCGGTATGGACAATGTTAGGAATCCCGTTGGTAATCCTATCGCCGGAATTGACCCAGACGAAATTATCGATACCCGGCCTTACACCAATTTGCTGTCCCATTTCATCACTGCCAATTCACTTGGGAATCCTATCATCACTAACTTGCCACGAAAATGGAATGTATGCGTGGTGGGGACTCATGATCTCTTCGAGCATCCTCACATCAACGATCTTGCTTACATGCCTGCCACGAAGAATGGACGGTTTGGATTCAATTTGCTGGTGGGCGGGTTTTTCAGTCCCAAGCGATGTGCAGAGGCAGTTCCACTCGATGCCTGGGTGTCGGGAGATGACGTGATCCCAGTGTGCAAGGCTGTCTTAGAGGCTTACAGGGATCTTGGCACTAGAGGGAACCGACAAAAGACAAGGATGATGTGGTTAATCGACGAACTCGGAATAGAAGGATTCAGGGCAGAAGTGGAGAAGAGAATGCCAGGAAAAGAGCTGGAGAGAGGATCATCTGAAGATCTTGTTAAAAAGCAGTGGGAGAGGAGGGATTATCTAGGAGTGCATCCACAAAAACAGGAGGGTCTCAGCTACGTCGGACTGCATATTCCTGTCGGCCGAGTCCAAGCAGACGACATGGACGAGCTAGCCCGATTGGCTGACGAATATGGCACGGGTGAGCTAAGGATCACAGTTGAACAAAACATCATCCTCCCCAACGTCCCAAACTCAAAGCTCGAAGCTTTACTAGTCGAGCCTCTCCTAAAGAACCGGTTTTCACCCGAACCACCTCTTTTGATGAAAGGGCTGGTGGCCTGCACTGGGAACCAGTTTTGCGGGCAGGCGATTATTGAAACGAAGGCAAGGGCGTTGCAGGTGACGGAGGAGGTGGAGAGGCTGGTGTCGGTCAAAAGGCCGATTCGAATGCACTGGACGGGCTGTCCGAATACGTGCGGGCAAGTGCAGGTGGCCGATATTGGGTTCATGGGGTGTATGACAAGGGATGAGAATGGGAAGACTTGTGAAGGAGCTGATGTGTTCTTGGGTGGGAGAATTGGGAGTGATTCACATTTAGGGGATGTTTACAAGAAGGGTGTCCCTTGTAAGAACTTGGTGCCATTGGTTGTGGACATTCTGATAAAGCACTTTGGAGCTGTTCCAAGAAACAGAGAGGAGGAAGAAGAAGATTAG 1695 49.91 MRVFASPAVAVAAAGEEVDQTRLEPRVEERDGYWVLKEKFREGINPQEKVKIEKEPMKLFMEGGIEDLAKLSMGEIDKAKTTKDDIDVRLKWLGLFHRRKHQYGTFMMRLKLPNGVTTSEQTRYLASVIRKYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLVKVGLTSLQSGMDNVRNPVGNPIAGIDPDEIIDTRPYTNLLSHFITANSLGNPIITNLPRKWNVCVVGTHDLFEHPHINDLAYMPATKNGRFGFNLLVGGFFSPKRCAEAVPLDAWVSGDDVIPVCKAVLEAYRDLGTRGNRQKTRMMWLIDELGIEGFRAEVEKRMPGKELERGSSEDLVKKQWERRDYLGVHPQKQEGLSYVGLHIPVGRVQADDMDELARLADEYGTGELRITVEQNIILPNVPNSKLEALLVEPLLKNRFSPEPPLLMKGLVACTGNQFCGQAIIETKARALQVTEEVERLVSVKRPIRMHWTGCPNTCGQVQVADIGFMGCMTRDENGKTCEGADVFLGGRIGSDSHLGDVYKKGVPCKNLVPLVVDILIKHFGAVPRNREEEEED 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 25226594 25229032 - BLOR07138 Blo15g00744 71144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00744 564 Gene3D Sulfite Reductase Hemoprotein, domain 1 167 352 IPR045854 -
Blo15g00744 564 Pfam Nitrite and sulphite reductase 4Fe-4S domain 439 547 IPR006067 GO:0016491|GO:0020037|GO:0051536
Blo15g00744 564 Pfam Nitrite and sulphite reductase 4Fe-4S domain 175 331 IPR006067 GO:0016491|GO:0020037|GO:0051536
Blo15g00744 564 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 100 164 IPR005117 GO:0016491
Blo15g00744 564 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 357 418 IPR005117 GO:0016491
Blo15g00744 564 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 4 562 - -
Blo15g00744 564 PRINTS Sirohaem Fe-binding site signature 436 454 IPR006066 GO:0016491|GO:0020037|GO:0051536
Blo15g00744 564 PRINTS Sirohaem Fe-binding site signature 480 498 IPR006066 GO:0016491|GO:0020037|GO:0051536
Blo15g00744 564 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 436 547 IPR045854 -
Blo15g00744 564 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 175 333 IPR045854 -
Blo15g00744 564 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 480 496 IPR006066 GO:0016491|GO:0020037|GO:0051536
Blo15g00744 564 Gene3D Sulfite Reductase Hemoprotein, domain 1 432 562 IPR045854 -
Blo15g00744 564 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 23 174 IPR036136 GO:0016491
Blo15g00744 564 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 311 447 IPR036136 GO:0016491
Blo15g00744 564 Gene3D - 43 424 - -
Blo15g00744 564 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 4 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00744 K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] - pvy:116140875 1003.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00106 Blo-Chr8:1111386 Blo15g00744 Blo-Chr15:25226594 7.67E-25 dispersed
Blo15g00744 Blo-Chr15:25226594 Blo14g00287 Blo-Chr14:2859452 1.47E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g409 . Blo15g00744 Bda06g01068 . Bpe07g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1177 Cone10ag0984 . . . . . . . . . . . . . . . . . . . Cpe14g00297 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011811 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00744 Blo_Chr15 FPKM 0.567073 0.0 0.0 0.0 1.604106 1.745884 2.072558 0.0 0.0 0.489735