Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00791 ATGGTGCGCTGGAATCGGTCCCCCAATCATAGCAAGAAGACAATGAACTGCGTGAGCAAACGGAAGGTGAGAAATCTGTTGATCAATAACTGTAAGATCAGAAGAACAGATCCAGCAACTCCAGCCGTTGGATCCATCAGACTTTCTTTTTCTGCTCTTTTAAAAGCCCCTCTTCCACTCCTTGCTCTCTGTCTCTCTCTAACACACCCCAGGCGATCTTCCTTTCTCTTTCACGCCACACAAACAGTGTCTCTGAGAGAGAGCCCTTATCCCGCGCTTCTTGCTTATCTCTTAGCGCCCATTGGAGGAACTCAACTCAATGAATCTCGCATTTGGCGCACCAAGGGCCTCATTGGCGGCAAATGGACTGATGCGTATGATGGGAAGACCATTAAGACTGCCATCAAAGTGAATAACTGTTCACTAAGCTCAGCTGAAGAGCAAAGAAAAATGGTTTTTGTGATAAAGATGTTTGGTTATCCAGCTCAGTTGGAGCACTATTCCTCCTTGTCGTACAGATATTGTATCCTCATTGATTCGTCATCGTTCCCATTTTCATATGTTTACAATCCGGCGAATGGGGAGGTTGTAGCAGATGTCGCGTGTATGGGTGGTAGGGAGGCGGATGATGCTATCGCTTGCGCCGCTGAGGCTTTTAAGACTTGGGGAAAGCTTACAGGACTTGAAAGGAGCAAACGTCTGAGGAGATGGTTTGACTTACTGATTGCACACAAGGAAGAGCTTGGCCAACTCATAACTTTAGAGCAAGGAAAGCCTCTTAAAGACGCCATTGGCGAGGTCGTCTTTGGAGCAAGCTACATTGAGTTTTTCGCAGAGGAAGCTAAACGAGTTTATGGTGATATAATTCCATCTACATTAGCCGATCGCCGTGTCCTGATCTTAAGACAGCCAGTTGGAGTTGTGGGTGCAATTACACCATGGAACTTTCCTTTGGCTATGATTGCTCGGAAGGTTGGTCCTGCTCTTGCATGTGGCTGCACTATCGTCATAAAACCCTCTGAACTTACACCTCTCACGGCCTTAGCAGCTGCTGAGCTCTCTCTTCAGGCTGGAATTCCCCCGGGTGTTGTGAATGTGGTCATGGGAATTGCTCCTGAAATTGGGAAGGCTTTACTTGCCAGCAAAGAGGTAAGAAAGATTACTTTTACTGGCTCAACAGCAGTGGGGAAGATGTTGATGGCTGGTTGTGCAGACACCGTTAAAAAGGTGTCTCTGGAGCTTGGTGGGAATGCACCTTGCATTGTGTTTGATGATGCAGACATTGAGGTTGCAATAAAAGGAACTCTTGGTGCAAAGTTCCGAAACACTGGACAAACTTGTGTCTGCGCCAACAGGATTTTTGTTCAAGAAGGCATATACGATAAGTTTGCTGCTGCATTAACGAAAGAAATCCGGAATCTGCGAGTAGGAGATGGCTTTGGTGAAGGAGTGGTTCTGGGTCCTCTCATTAATGAAGCTGCAATTCAGAAGGTTGAAACATTTATTCAAGATGCTGTCTCTAAGGGAGCAAAAGTTCTTCTGGGGGGCCGAAGGCATAGGCTTGGAATGACCTTTTATGAGCCGACGGTTCTTAAGGAGGTCAAGAACGACATGCGGATAGCCAGAGATGAAGTATTTGGTCCTGTCGTACCTTTATTGCGGTTTAAAACTGAGGAGGAAGTCATTTCGCTTGCTAACGATACCAACGCAGGTTGGTTGGCTGCTTACGTATTCACGACAAATGTCCAACGATCTTGGCGTTTGACTGAATCTCTTGATTACGGCATTGTTGGTGTCAATGAAGGACTCATTTCTACAGAGGTAGCTCCATTCGGAGGCTTTAAACAATCAGGGCTTGGTCGGGAAGGTTCGAAATACGGGATGGATGACTATCTGGAGGCCATGAAGATTATAAATTTCTTCACTGCTCTCTCTGTCAGAAAAGATTGGACCGGAACCCTTTCTATGCTTGTGTTGATTGCAAATTTTATATTCACAAATCCTGTGCTAATCTTCCGGTTGAGATCCAACATCATTTTCATCAACCACACCTTCTTTCATTATGCCTTGCAAGCTCCTTTGCTTGTGATTCTTGCCATAAGACATTCCATAATGAGGTCTGCATTTTGTCAATTTTCTGAAGAATCAAGTGAATTCGAGCGTACTAAATCATACTCACTACGATGCATCCAATGTGACTACAATCTTCATCTTTTATGTGGTCCTTTGCCTTGCACCATCAAACACAAAAGCCATCTTCATGTTTTGACACTAGTGGACTCCATGGCTGAAGATGATTCTGACGACCAATATTGTGATACATGCGAGGAGATAAGAAATCCCAGATTATGTGTCTACTACTGCAAAGATTGTAAATTTATTTCTCACGTTCATTGTGTACTATCCGAGATTATAAATTCAATGAAGAAAAGCCTTGAGAAAGTTGAGTTGAGAATTGGGAGGGACTTCAATCATACAGAGAACATAGAACTGTCGGATAACAATGTAACTAGAGAGAAATTGACGTTAATGGATCTACTCAATTCTTTAAGTGAAGGTGATCTGACTTTGTTGGAATGGGTTTTTCCTGGTGCAAAACTTTATGTAAGAGATGAAAATGCAACGTGGATTTTTCTAGAACACAAATCAAGTTCTGAAGAGGATGCAATTGACATTATGGAAGAGCTTTCTCTGTACAATGATGATATCTTTCTCAACATTGAGAATAGATTAAAATGTTTTAAACTGGACACAAAATTTCATATTCAACAAGATGAATGTGAACTGCCAATAGTTGAAGTCAAAGGTTACAAGGTCACTTCTAATTTTGTCTCTCTTTTTAGAGCTTTATTGATGAAACACGGTGACATCGGCTATAATAATTTTAGAGCCATGAGCAATGTCAGGTCCATTTTGCTTTATTTTCTTTGTCGCGTACTAAGTGACATGCGTAGAACCTATATTGCCGACATTACTGAGAAGCAGCTTTTCACTTGGTTTTACTACTTGGACCGAATAAGCAAATTTTCTTTTGACTTAAGTTTTGTGGGACCTTTACGAGAAAGGGTTATGAGATCTTACTTTGGTCTTCGGGCAATGAATTTTGAGAATGAAGCTGTTGGCAGATTGGATTGTGAGATTGTGAATGTTGATAAAAAGATTTTTGAGCTGAAAACTAAAAGAGAAGAACTAGAAAAGCATCGACAACAACACAAGTCTGGTAAGATAGCAGAGGAATCGGCAGTCATGAGGGAGTTAATCACCGAGGCCAAGAAGCTAAAATGGGAAAGAGCTGGTGATGGTTTTTTTTAA 3312 42.39 MVRWNRSPNHSKKTMNCVSKRKVRNLLINNCKIRRTDPATPAVGSIRLSFSALLKAPLPLLALCLSLTHPRRSSFLFHATQTVSLRESPYPALLAYLLAPIGGTQLNESRIWRTKGLIGGKWTDAYDGKTIKTAIKVNNCSLSSAEEQRKMVFVIKMFGYPAQLEHYSSLSYRYCILIDSSSFPFSYVYNPANGEVVADVACMGGREADDAIACAAEAFKTWGKLTGLERSKRLRRWFDLLIAHKEELGQLITLEQGKPLKDAIGEVVFGASYIEFFAEEAKRVYGDIIPSTLADRRVLILRQPVGVVGAITPWNFPLAMIARKVGPALACGCTIVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGIAPEIGKALLASKEVRKITFTGSTAVGKMLMAGCADTVKKVSLELGGNAPCIVFDDADIEVAIKGTLGAKFRNTGQTCVCANRIFVQEGIYDKFAAALTKEIRNLRVGDGFGEGVVLGPLINEAAIQKVETFIQDAVSKGAKVLLGGRRHRLGMTFYEPTVLKEVKNDMRIARDEVFGPVVPLLRFKTEEEVISLANDTNAGWLAAYVFTTNVQRSWRLTESLDYGIVGVNEGLISTEVAPFGGFKQSGLGREGSKYGMDDYLEAMKIINFFTALSVRKDWTGTLSMLVLIANFIFTNPVLIFRLRSNIIFINHTFFHYALQAPLLVILAIRHSIMRSAFCQFSEESSEFERTKSYSLRCIQCDYNLHLLCGPLPCTIKHKSHLHVLTLVDSMAEDDSDDQYCDTCEEIRNPRLCVYYCKDCKFISHVHCVLSEIINSMKKSLEKVELRIGRDFNHTENIELSDNNVTREKLTLMDLLNSLSEGDLTLLEWVFPGAKLYVRDENATWIFLEHKSSSEEDAIDIMEELSLYNDDIFLNIENRLKCFKLDTKFHIQQDECELPIVEVKGYKVTSNFVSLFRALLMKHGDIGYNNFRAMSNVRSILLYFLCRVLSDMRRTYIADITEKQLFTWFYYLDRISKFSFDLSFVGPLRERVMRSYFGLRAMNFENEAVGRLDCEIVNVDKKIFELKTKREELEKHRQQHKSGKIAEESAVMRELITEAKKLKWERAGDGFF 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 27024539 27033337 + BLOR07185 Blo15g00791 71191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00791 1103 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 187 639 - -
Blo15g00791 1103 SUPERFAMILY ALDH-like 183 634 IPR016161 GO:0016491
Blo15g00791 1103 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 188 633 IPR010102 GO:0009013|GO:0009450
Blo15g00791 1103 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 440 451 IPR016160 GO:0016491
Blo15g00791 1103 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 416 606 IPR016163 GO:0016620
Blo15g00791 1103 Coils Coil 1047 1070 - -
Blo15g00791 1103 Pfam Aldehyde dehydrogenase family 187 635 IPR015590 GO:0016491
Blo15g00791 1103 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 187 639 - -
Blo15g00791 1103 CDD ALDH_F5_SSADH_GabD 188 633 - -
Blo15g00791 1103 SUPERFAMILY Cysteine-rich domain 724 802 IPR046349 -
Blo15g00791 1103 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 412 419 IPR029510 GO:0016491
Blo15g00791 1103 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 188 631 IPR016162 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00791 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - dcr:108200251 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00869 Blo-Chr2:33613475 Blo15g00791 Blo-Chr15:27024539 0 dispersed
Blo05g00037 Blo-Chr5:317619 Blo15g00791 Blo-Chr15:27024539 7.41E-51 dispersed
Blo13g00203 Blo-Chr13:8401545 Blo15g00791 Blo-Chr15:27024539 1.09E-17 dispersed
Blo14g00489 Blo-Chr14:6331403 Blo15g00791 Blo-Chr15:27024539 9.27E-11 dispersed
Blo15g00637 Blo-Chr15:16738301 Blo15g00791 Blo-Chr15:27024539 3.75E-136 dispersed
Blo15g00639 Blo-Chr15:16753312 Blo15g00791 Blo-Chr15:27024539 4.58E-106 dispersed
Blo15g00791 Blo-Chr15:27024539 Blo16g01155 Blo-Chr16:40075129 2.45E-97 dispersed
Blo15g00791 Blo-Chr15:27024539 Blo01g00398 Blo-Chr1:4515469 3.39E-99 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo08g00284 . 16 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.2 9.2e-216 746.5
Blo16g00815 . 70 586 Aldehyde Dehydrogenase Gene Family AT3G24503 66.4 8.7e-198 686.8
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G24503 67.4 4.8e-188 654.4
Blo14g00484 . 5 444 Aldehyde Dehydrogenase Gene Family AT3G24503 65.3 1.8e-187 652.5
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 4.5e-186 647.9
Blo01g00702 . 3 468 Aldehyde Dehydrogenase Gene Family AT3G24503 66.0 2.7e-175 612.1
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G24503 69.1 2.8e-172 602.1
Blo01g00398 CCT,ECH 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.7e-159 558.1
Blo16g01155 . 65 567 Aldehyde Dehydrogenase Gene Family AT3G24503 52.6 1.3e-153 540.0
Blo01g00398 CCT,ECH 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.7e-250 860.5
Blo16g01155 . 37 567 Aldehyde Dehydrogenase Gene Family AT3G48000 73.9 1.0e-236 816.2
Blo08g00284 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.6 2.3e-164 575.9
Blo16g00815 . 86 586 Aldehyde Dehydrogenase Gene Family AT3G48000 53.3 1.9e-158 556.2
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G48000 52.3 3.3e-150 528.9
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 7.2e-150 527.7
Blo11g00908 CCT,ECH 1 361 Aldehyde Dehydrogenase Gene Family AT3G48000 63.0 3.5e-144 508.8
Blo01g00702 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 2.8e-141 499.2
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G48000 54.1 1.3e-138 490.3
Blo14g00484 . 18 444 Aldehyde Dehydrogenase Gene Family AT3G48000 50.5 8.3e-138 487.6
Blo01g00398 CCT,ECH 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 76.2 1.9e-171 599.0
Blo16g01155 . 46 421 Aldehyde Dehydrogenase Gene Family AT1G23800 74.5 1.6e-165 579.3
Blo16g00815 . 65 439 Aldehyde Dehydrogenase Gene Family AT1G23800 51.7 1.3e-103 373.6
Blo08g00284 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 1.2e-101 367.1
Blo16g00811 . 43 373 Aldehyde Dehydrogenase Gene Family AT1G23800 52.0 8.9e-92 334.3
Blo01g00700 . 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 2.0e-91 333.2
Blo01g00702 . 3 314 Aldehyde Dehydrogenase Gene Family AT1G23800 53.2 6.2e-85 311.6
Blo11g00908 CCT,ECH 1 212 Aldehyde Dehydrogenase Gene Family AT1G23800 60.7 1.7e-82 303.5
Blo16g00812 . 1 267 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.5e-80 295.8
Blo16g00548 . 273 756 Aldehyde Dehydrogenase Gene Family AT4G34240 68.8 3.9e-196 681.4
Blo12g01125 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.1e-177 620.2
Blo12g01125 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 4.0e-180 627.9
Blo16g00548 . 344 753 Aldehyde Dehydrogenase Gene Family AT1G44170 68.0 8.4e-162 567.0
Blo16g00062 . 67 461 Aldehyde Dehydrogenase Gene Family AT1G44170 52.4 8.3e-117 417.5
Blo08g00098 . 1236 1594 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 4.6e-99 358.6
Blo16g00062 . 1 460 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 2.7e-180 628.6
Blo08g00098 . 1236 1596 Aldehyde Dehydrogenase Gene Family AT4G36250 57.3 1.4e-123 440.3
Blo02g00869 . 1 484 Aldehyde Dehydrogenase Gene Family AT1G79440 76.4 6.1e-218 753.8
Blo15g00791 . 105 637 Aldehyde Dehydrogenase Gene Family AT1G79440 66.6 1.3e-204 709.5
Blo15g00637 . 181 439 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 1.7e-114 410.2
Blo15g00639 . 1 238 Aldehyde Dehydrogenase Gene Family AT1G79440 77.7 2.9e-103 372.9
Blo05g00732 . 37 456 Aldehyde Dehydrogenase Gene Family AT2G14170 62.2 2.6e-156 549.3
Blo13g00203 . 71 300 Aldehyde Dehydrogenase Gene Family AT2G14170 69.8 2.9e-83 306.6
Blo13g00204 . 42 242 Aldehyde Dehydrogenase Gene Family AT2G14170 54.0 6.8e-48 189.1
Blo13g00042 BCT 812 1278 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 7.4e-234 806.6
Blo15g00282 BCT 102 561 Aldehyde Dehydrogenase Gene Family AT1G74920 80.7 1.2e-226 782.7
Blo13g00042 BCT 816 1278 Aldehyde Dehydrogenase Gene Family AT3G48170 80.1 1.4e-232 802.4
Blo15g00282 BCT 99 563 Aldehyde Dehydrogenase Gene Family AT3G48170 79.1 4.3e-229 790.8
Blo16g00906 . 1 459 Aldehyde Dehydrogenase Gene Family AT2G24270 88.2 9.8e-242 832.8
Blo16g00194 . 26 460 Aldehyde Dehydrogenase Gene Family AT5G62530 82.1 4.3e-214 741.1
Blo12g00082 . 3 588 Aldehyde Dehydrogenase Gene Family AT3G66658 82.9 7.7e-294 1006.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002452 20 0 7 25 5 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00791 Blo_Chr15 FPKM 18.42148 20.052401 10.373349 10.267489 9.447206 9.981383 9.791116 8.950987 7.622747 8.485777