Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00006 ATGGGCTCTGGAGATTGGTTTAAGACAGTTTTGAGGTTAAGGAAAGTGAAGTACAGCGGTTCTAAGCAAGTAAAGAAGTCATCGTCGTCTGCAAAATCAAGTGCTTTAAAATGGCCGCATACTCTGAGGAAAGAGTCCAACGATATGCCCGTAGAAGTCGCAGCAGCTACTCGGATTCAGACTGCATTTCGAGCATATATGGCTAGAAAAAGTTTACGACGGTTGAAAGGGATAGTGAGATTGCAGAAGCAATCACTAGGCTGTTCTGTTAAAAAGCAATCTACATCCACCTTAGCCTATCTTCATTCATGGGGAAAAATACAATCCCAAATCAGAGAACGCAGGCTTTATATGGTAACCGAAGGCCGAATGAAACAGAAGAAACTAGAGAATCAACGAAAACTTGAGGCCAAGCTTCATGAAGTTGAGGTGGAGTGGTGTGGTGGCCCTGAAACAATGGACGCAATTCTGGCTAGAATACACGATCGAGAAGAGGCTGCAGGTAAGCGGGAGCGAGCTATGGCGTATGCCTTTTCACATCAGTGGAGGGCCAACTCTAATCAAATCCAATGGCTGGGAAAAGATGAATTGGGGAAATCTAATTGGGGCTGGAGTTGGAAGGAGCGTTGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTGACTTCTCGAGCCAACAGTCCGAAGAAAGTTCTAAGTAGGCAGTCTAGCAAAGCTGGTAAGAAGAAAAATTCATTGTCACCAAAAACACCACTCTTGGTTAAGTCTCTTTCTCCCAATGGGAAGCCAACAGCAAAAGCTAAGAGGCTGTTCTATCCTGCTTCCGAGAAGCCAGCAACACTTGACGGCAGCAAAAATGTCGAAGAAGATGCTAAGACTGACAATTTGACAACTTAA 894 45.19 MGSGDWFKTVLRLRKVKYSGSKQVKKSSSSAKSSALKWPHTLRKESNDMPVEVAAATRIQTAFRAYMARKSLRRLKGIVRLQKQSLGCSVKKQSTSTLAYLHSWGKIQSQIRERRLYMVTEGRMKQKKLENQRKLEAKLHEVEVEWCGGPETMDAILARIHDREEAAGKRERAMAYAFSHQWRANSNQIQWLGKDELGKSNWGWSWKERWIAARPWESRVTSRANSPKKVLSRQSSKAGKKKNSLSPKTPLLVKSLSPNGKPTAKAKRLFYPASEKPATLDGSKNVEEDAKTDNLTT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 433825 435642 - BLOR07254 Blo16g00006 71197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00006 297 MobiDBLite consensus disorder prediction 221 253 - -
Blo16g00006 297 PANTHER IQ-DOMAIN 9 1 278 - -
Blo16g00006 297 PANTHER IQ-DOMAIN 5-RELATED 1 278 - -
Blo16g00006 297 MobiDBLite consensus disorder prediction 221 297 - -
Blo16g00006 297 Coils Coil 125 145 - -
Blo16g00006 297 ProSiteProfiles IQ motif profile. 52 80 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00006 - - - cmax:111497513 355.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00960 Blo-Chr7:28965953 Blo16g00006 Blo-Chr16:433825 5.00E-70 dispersed
Blo13g00730 Blo-Chr13:30127523 Blo16g00006 Blo-Chr16:433825 7.38E-36 dispersed
Blo16g00006 Blo-Chr16:433825 Blo18g00281 Blo-Chr18:2953121 1.11E-27 dispersed
Blo16g00006 Blo-Chr16:433825 Blo09g00550 Blo-Chr9:16793475 1.04E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00730 CCT,ECH 65 305 IQD Protein Family AT3G09710 50.8 6.9e-56 215.3
Blo09g00550 BCT 1 468 IQD Protein Family AT5G03040 50.3 7.4e-103 371.3
Blo13g00730 CCT,ECH 1 466 IQD Protein Family AT3G52290 51.1 1.1e-95 347.4
Blo03g01027 . 10 361 IQD Protein Family AT3G22190 57.0 4.0e-79 292.4
Blo01g01460 BCT 1 439 IQD Protein Family AT2G26180 60.9 4.6e-120 428.3
Blo12g01017 BCT 1 431 IQD Protein Family AT2G26180 60.9 1.8e-119 426.4
Blo18g00281 . 414 674 IQD Protein Family AT2G26180 56.3 6.8e-63 238.4
Blo03g01027 . 41 212 IQD Protein Family AT2G26180 61.7 1.1e-41 167.9
Blo16g00006 . 1 274 IQD Protein Family AT2G33990 52.5 5.6e-63 238.0
Blo07g00960 . 83 287 IQD Protein Family AT3G15050 54.1 3.6e-54 208.8
Blo02g00186 . 1 502 IQD Protein Family AT4G00820 50.4 1.5e-110 397.1
Blo05g00074 BCT,CCT,ECH 1 378 IQD Protein Family AT3G16490 50.9 1.0e-68 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00006 Blo_Chr16 FPKM 0.670782 0.768382 0.458825 0.171157 0.0 0.0 0.0 0.488629 0.017375 0.521714