Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00038 ATGGCGAAGCGTCTGAAGCAGAAGATCGCGAAGGTGATACCATCCTTCCAATCATGCCGTTCAAAAGGCACCTCCGTTCTTCCCATGAACCCTCATCCTTCCTTACCCTCTATATCTACGCTCAACTCCAACGTCACCAACCCCCATTTTTCACACCCAACGAATCCCCCTCCTCCTCCACCTCTACCTTCACAATCTGCATCATCTGCCTTCGGCGTATGCCTTCCTTCCAGATTTACTCCCTCCCACGACGACCCAAAACTAACTCCCCAGTTTCAGTGGCGAAAAGAAGATAAGTGGCACGTCGTAGCTAAGGTATACGACCGGAGCCTCTGCCCTCACCGGAAAACTTGTATCTCCTCCATTTCCGGCGCCTCTGGATTCGAATATGACGTTTTAGAGCCTCCAGCCCTTCCCTGTCCTTCATTCTCGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAGAAAAAGAAAACGGTCTCTGGACTTCGCATCAGCACTTCCTCAGAGGAAAGTGGGTTGTCCAGCCGCGAAAGTTTCGGAGACATGGACGATGAAGAAACCGAAGCCCTAGTTTCATATTCCAGTTCATCGGAATTCAACCCTCGTCTAGGAAAAATTCGCGGAAAAACGTCTACCCCGAGACGAAAGAAGAAGAAGAAGAAAAGGACAACCAAGAAGGAAGTGCACTCGCCGGGGTGCGAATCTCCGGCGAGACTGTCGGTGTTTCAGAGGCTGATACCTTGCGCGGTGGAGGGAAAGGTGAGGGAGAGTTTTGCAGTGGTGAAAAAATCAGAGAACCCTTACAAAGACTTCAAGAGGTCGATGATGGAGATGATTCTAGAGAAGGAGATGTTCGACGAGAATGATTTGGTGCAGCTTTTGCACTGTTTGCTTTCTCTGAATGATAAGCAACACCATGGAGTTATCATTGAAGCTTTCTCCGAGATATGGGAAGCCTTGTTCTGCAGAAGATCAACTCACCCATCAGTTTAA 996 48.69 MAKRLKQKIAKVIPSFQSCRSKGTSVLPMNPHPSLPSISTLNSNVTNPHFSHPTNPPPPPPLPSQSASSAFGVCLPSRFTPSHDDPKLTPQFQWRKEDKWHVVAKVYDRSLCPHRKTCISSISGASGFEYDVLEPPALPCPSFSQKKKKKKKKKQKKKTVSGLRISTSSEESGLSSRESFGDMDDEETEALVSYSSSSEFNPRLGKIRGKTSTPRRKKKKKKRTTKKEVHSPGCESPARLSVFQRLIPCAVEGKVRESFAVVKKSENPYKDFKRSMMEMILEKEMFDENDLVQLLHCLLSLNDKQHHGVIIEAFSEIWEALFCRRSTHPSV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1770577 1771572 - BLOR07286 Blo16g00038 71229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00038 331 MobiDBLite consensus disorder prediction 144 160 - -
Blo16g00038 331 Pfam Transcriptional repressor, ovate 265 322 IPR006458 -
Blo16g00038 331 ProSiteProfiles OVATE domain profile. 261 320 IPR006458 -
Blo16g00038 331 MobiDBLite consensus disorder prediction 51 65 - -
Blo16g00038 331 MobiDBLite consensus disorder prediction 20 69 - -
Blo16g00038 331 MobiDBLite consensus disorder prediction 209 227 - -
Blo16g00038 331 PANTHER TRANSCRIPTION REPRESSOR OFP7 1 326 - -
Blo16g00038 331 MobiDBLite consensus disorder prediction 20 50 - -
Blo16g00038 331 MobiDBLite consensus disorder prediction 139 234 - -
Blo16g00038 331 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 326 IPR038933 GO:0045892
Blo16g00038 331 MobiDBLite consensus disorder prediction 161 176 - -
Blo16g00038 331 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 259 321 IPR006458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00038 - - - jre:108995350 279.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00923 Blo16g00038 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00289 Blo-Chr8:4036032 Blo16g00038 Blo-Chr16:1770577 1.50E-22 dispersed
Blo16g00038 Blo-Chr16:1770577 Blo16g01035 Blo-Chr16:38785765 2.67E-25 dispersed
Blo16g00038 Blo-Chr16:1770577 Blo04g00923 Blo-Chr4:10927365 1.25E-118 wgd
Blo16g00038 Blo-Chr16:1770577 Blo08g00604 Blo-Chr8:22132286 8.36E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g945 Blo04g00923 Blo16g00038 . . . . . . Cmo04g00834 . . . . . . . . . . . . . . . . . . . . . . Cone8ag0800 Cone12ag0753 . . . . Chy07g01287 . . . . . . . Bma03g00994 . . . . . . . . . . . . . . . . . Cla07g00862 Cam07g0934 Cec07g0999 Cco07g0977 Clacu07g0908 Cmu07g0908 Cre07g1276 Lsi07g00211 Csa04g00514 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011669 1 0 2 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 2 1 1 1 1 1 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13359 PF04844 Ovate 4.10E-23 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00038 Blo_Chr16 FPKM 9.2501 8.431804 11.911359 10.594457 17.343035 16.599041 16.707747 14.09243 13.449233 12.982831