Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00039 ATGAAGAGTTTACAGAGGAAGGAGAATTACAGAGAAAAGGGAAAATTACAAGAAAATAAGAAAAGACAATTCTTCATCGACGACTCTTCCTTGCTGCCCTATCTGCCTTGCCCTGCCTTTTATAGTTGGCTTACTCTCTTCTCATTGGAGACACGTGTACGACGGACAATGGTTGCTGATAACAAGCTAAAGAATGAAGGTTCTATCGATTCCCCGACGTCGGTGCTTGAAGACGAGGATTTAGGCAACCAAGCAAATGGAGTCCAACAGGAGGGCGAGATACTGCAGGATGCAAAAAACGGGGATTGCATTCTTATATCAAGAGAAATGGAAGTGGAGGAAGGGAACTTACTAAAAGCTCGGATGAAGGAAGAGGAGGTAGAGTTGGGAAAGAAGTCAAATGTGGCAACACATATGGATGAAAGTCAATTTACAAAATTGGATGAGCTCTTAACTCAAACACAGTTATATTCAGAGTTTCTACTGGAGAAAATGGACGACATTACATTTAACGGAGTGGAGATGGAAACTGAACCTGTTGAGAAGAAAAAAGGTCATGGCTCTAAAAGAAAAGCCTCCGCAAACTACAATAATAGGAAAGCCAAGAGGGCAGTTGCAGCAATGCTCACTAGATCTCAAGAAAGTGGGAAGGATGAAGATGCAAATCTTACTCTAGAAGAACGAGTTGCAAAGGAACAGAGAGAATTGGTACCGCTGCTGACTGGTGGACACTTGAAGTCATATCAACTCAAAGGTGTAAAATGGTTGATCTCATTATGGCAAAATGGATTAAACGGGATTCTTGCTGATCAAATGGGGCTTGGAAAGACAATTCAGACCATTGGTTTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCGTACTTAGTGATTGCTCCTCTTTCTACTCTGTCCAATTGGGTTAATGAGATTTCAAGGTTTGTGCCATTAATAAATGCTATTATCTATCATGGTGATAAGAAACAAAGGAATGAGTTACGTACAAAGTACATGCCAAGGACGGTAGGCCGAAGATTCCCCATAGTAATAACATCTTATGAGGTTGCTATGAGCGATGCAAGAAGATTTTTGAGACATTATAACTGGAAATATCTTGTCGTAGATGAGGGACACAGATTGAAAAACTCAAAATGCAAACTTTTGAGGGAGTTGAAACTTTTATCTGTTGAGAATAAGCTTTTATTAACTGGGACGCCACTGCAGAATAATCTAGCAGAGCTTTGGTCGTTGTTGAACTTTATCTTGCCAGATATTTTCTCATCCCATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAATACAGCACTGAAGAGAGAGAAGAGTTAGTAGAGAAGCAAAAGAGTCAGGTAGTTGTTGCAAAACTACATGCAATATTGCGTCCATTTCTACTCCGAAGAATAAAATCAGACGTGGAAAACATGCTTCCTGGAAAGAAAGAGATTATAATCTATGCCAACTTAACAGAATATCAGAAGAATTTTCAAGATCATTTAATAAATAAAAGTTTGGAAGAGCATCTCACGGAGAAGAAGGCATCTTCTGGACATAGTGTGAGAAAAAAACTGAACAATTTGATGATCCAACTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTGCTTTTGATAATTCATACACATATCCACCAGTAGAGCAACTAGTTGAACAATGTGGTAAATTTCATTTGCTGGACAGATTGTTGGCACGCCTATTTGCTCGCAAGCATAAAATCCTTATCTTCACCCAATGGACTAAGATTTTGGACATCATGGATTACTACTTTAGTGAAAAAGGATTTGAAGTTTGTAGAATAGATGGCAGTGTGAAGCTAGATGAAAGGAGGAGACAAATTCAGGATTTCAATGATGTGAACAGCAATTATAGAATTTTTCTTCTAAGCACCCGAGCTGGTGGACTGGGAATAAATCTTACAGCTGCAGATACTTGTATACTCTACGACAGCGATTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATTGGTCAAACCAAGCCAGTTCATGTTTATAGGCTTGCCACTGCTCAATCAGTAGAGGGACGCATTCTGAAACGAGCATTTAGTAAGTTGAAGCTTGAGCATGTAGTAATTGGGAAAGGACAGTTTCACCAAGAACGAACCAAATCAAGCTCATATGATGTTACTGAGGAAGAAGAGCTGTTGGCACTGCTGAAGGAGGAAGAGAATGCTGAGGACAAGATGATACAGACAGACATTAGTGATGAAGATTTGGAAAGGCTATTGGATCGGTCAGATCTGGCAGTTGGTGCGGCTCCTCCAGATGTGGAGAAGTGCAATGGTTGGCTTCCTCCAAAAGGGCCAGATTTCGTTCTCACTCAGCCTCTCCGCCTTCGCCTCTCCCGACTCCCATCTCGATTCCCTGGCCTCAAGTCCTCGACAGTCGACAGCTCGCACGCCACTCAGTCTGACCTCTCCCTCGACAGCTCGCTCCACTCTCGCGGCCTCGCCTCCTCTCTGAACCTCTCCCTCGACAGCTCGCTCTCACCTCTCCCTCGACACTCGACAGTTCGCTCGCTCAACCCTCACGGCCTCGCCTCCTCTCTGAACCTCTCCCTCGACAACTCGCTCTCAGTGTTCAGTGTTCAGTGTCCTGTTTCGCCTGCTCAGTGCTCGGCTGCTCAGTGCTCGGCTGCTCGCCTGCTCAGTGCTCGGCTGCTCGCCTTCCTAGCAGTCCAGAGACTCCAGACTCCAGCGACAGGACGAGTTGGAGGATGCCATGTGAAGAGCAAGAGCAAGCTACTAGCATTTGAAACAATCAAATGTCCAAGTGCTGCCCTTCTCCTTCCACTCCCCTCGCCGAAAGCATCAGAACACATCATCTCTTCTGGTCCTAAAAGCATTCTCACTTTCCTTGCTTTTGGCTGGCCTAACTCCTCTGACCCTTCAAACCCACCTCAGCCGGATCGATCTCAATCTTACCCACGATCCCGTGGGCGAAGTCGGTGA 3030 44.06 MKSLQRKENYREKGKLQENKKRQFFIDDSSLLPYLPCPAFYSWLTLFSLETRVRRTMVADNKLKNEGSIDSPTSVLEDEDLGNQANGVQQEGEILQDAKNGDCILISREMEVEEGNLLKARMKEEEVELGKKSNVATHMDESQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEMETEPVEKKKGHGSKRKASANYNNRKAKRAVAAMLTRSQESGKDEDANLTLEERVAKEQRELVPLLTGGHLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPLINAIIYHGDKKQRNELRTKYMPRTVGRRFPIVITSYEVAMSDARRFLRHYNWKYLVVDEGHRLKNSKCKLLRELKLLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKYSTEEREELVEKQKSQVVVAKLHAILRPFLLRRIKSDVENMLPGKKEIIIYANLTEYQKNFQDHLINKSLEEHLTEKKASSGHSVRKKLNNLMIQLRKNCNHPDLLESAFDNSYTYPPVEQLVEQCGKFHLLDRLLARLFARKHKILIFTQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERRRQIQDFNDVNSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSSSYDVTEEEELLALLKEEENAEDKMIQTDISDEDLERLLDRSDLAVGAAPPDVEKCNGWLPPKGPDFVLTQPLRLRLSRLPSRFPGLKSSTVDSSHATQSDLSLDSSLHSRGLASSLNLSLDSSLSPLPRHSTVRSLNPHGLASSLNLSLDNSLSVFSVQCPVSPAQCSAAQCSAARLLSARLLAFLAVQRLQTPATGRVGGCHVKSKSKLLAFETIKCPSAALLLPLPSPKASEHIISSGPKSILTFLAFGWPNSSDPSNPPQPDRSQSYPRSRGRSR 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1771705 1788055 + BLOR07287 Blo16g00039 71230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00039 1009 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 59 798 - -
Blo16g00039 1009 Gene3D - 481 779 IPR027417 -
Blo16g00039 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 475 IPR027417 -
Blo16g00039 1009 Gene3D - 246 476 IPR038718 -
Blo16g00039 1009 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 425 IPR014001 -
Blo16g00039 1009 PANTHER SNF2/RAD54 HELICASE FAMILY 59 798 - -
Blo16g00039 1009 SMART helicmild6 599 683 IPR001650 -
Blo16g00039 1009 CDD SF2_C_SNF 559 693 - -
Blo16g00039 1009 MobiDBLite consensus disorder prediction 986 1009 - -
Blo16g00039 1009 Pfam Helicase conserved C-terminal domain 573 683 IPR001650 -
Blo16g00039 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 768 IPR027417 -
Blo16g00039 1009 Pfam SNF2-related domain 248 547 IPR000330 GO:0005524|GO:0140658
Blo16g00039 1009 MobiDBLite consensus disorder prediction 986 1001 - -
Blo16g00039 1009 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 573 766 IPR001650 -
Blo16g00039 1009 SMART ultradead3 241 436 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00039 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1113.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00920 Blo16g00039 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01253 Blo-Chr4:24771584 Blo16g00039 Blo-Chr16:1771705 7.95E-80 dispersed
Blo08g00123 Blo-Chr8:1294520 Blo16g00039 Blo-Chr16:1771705 1.54E-111 dispersed
Blo12g00182 Blo-Chr12:12217639 Blo16g00039 Blo-Chr16:1771705 3.48E-79 dispersed
Blo14g00419 Blo-Chr14:4682875 Blo16g00039 Blo-Chr16:1771705 6.46E-96 dispersed
Blo16g00039 Blo-Chr16:1771705 Blo16g00043 Blo-Chr16:1827286 1.89E-59 proximal
Blo02g00574 Blo-Chr2:10572496 Blo16g00039 Blo-Chr16:1771705 1.05E-99 transposed
Blo02g00834 Blo-Chr2:30339061 Blo16g00039 Blo-Chr16:1771705 3.30E-23 transposed
Blo07g01238 Blo-Chr7:32436431 Blo16g00039 Blo-Chr16:1771705 1.98E-42 transposed
Blo12g00606 Blo-Chr12:24361499 Blo16g00039 Blo-Chr16:1771705 7.71E-43 transposed
Blo13g00806 Blo-Chr13:30820135 Blo16g00039 Blo-Chr16:1771705 5.88E-20 transposed
Blo16g00596 Blo-Chr16:24412070 Blo16g00039 Blo-Chr16:1771705 2.07E-70 transposed
Blo17g00493 Blo-Chr17:7258656 Blo16g00039 Blo-Chr16:1771705 2.68E-64 transposed
Blo16g00039 Blo-Chr16:1771705 Blo04g00920 Blo-Chr4:10886248 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13360 PF00176 SNF2_N 4.50E-66 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00039 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0