Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00041 ATGGCCAAGTTACGTGTCCTTGACCTGGCGGCCCATGACTATTTACGTGGAATAGAGGCGACATGCTGGGCCAAATATGCCTTCTCTTCGATCCCAAAGTGCGACATAAGCCTCAACAACCTCAGCGAGTCCTTCAATGCCTGCATCCTACCCGCCCGGGACAAACCTATTCTATGTATGTTCGAGATCATTCGAAAGGGCATCATGGGTAGGATCGTAAAAAAATATGAAAAGATAGCTCAGTCGACCGAACGGTTGTGTCCAATGATCAGCAACCGCCTCGCCAAAGTACAACATGCCAGTAGAAATTGGAGCCCTCAGTTTGCAGGAGCTGCCCAGTTTGAGGTCAGCAACGGTACCGACATGTACGCTGTTGATTTGGAAAGGTGTACTTGTACATGTTACCGGTGGGAGTTGACCGGCATCCCGTGTGTGCATGCAATCCCGTGCATTCACTTCATGAGGAGATCTCCTGAGGATTTTGTGCATTGGTGCTATCACCGGGAAACATACATGGTGATGTACTCCCACTTTCTCCGCCCCCTTAATGGACCAATCGAGTGGCCTCCTGTGACGAATCTTGATCCAATTACCCCACCGCCTTTTAAAAGGCTTCGAGGAATGCCGCGCGTTCGTAGAATACGGGATGTGGACGAGGCCCCCAGCCGGACAGTGCTAAGCAGAAGACATTTGAACGTCACTTGTTGGCGGTGTGGGAGTGTGGGGCCCAATGCCCGCATGTGCGAAGGGGGAGGCCAGTCCAGTGCAGGGGCTGGCAGAGGCAACAGAGGGAGAGGCAGAGGCGGCAGTGGAAGGTCGGAGGACACCTTTATGGGGTTCAGAGTCCCCGAGACAGCTCCCGAGACAATTGCTTCCCTAGTCCCTGAGACAATTCCTTGTCGAGTGTCTGAGACAGTTCCTGATAGAGTTCATGAGACGCAGATTGCTGAACTAAAGGCTTCTGTTGGGCATCTATCTGGCCGGACTTCCATGTTCTGCACCGATGCCTGCCTGAAGAGATATTTAGTTGCTCGAAACTGGAACGTGGACAAGTCTAAGAAAATGTTAGAAGAGACTATCAGGTGGAGGGTATCTTACAAGCCGGAAGAGATCCGTTGGAATGAAGTGGCACATGAAGGCGAAACAGGGAAAGTATCGAGAGCAAACTTTCAAGATCGATTTGGGAGGACTGTTCTTATTTTGAGGCCAGGAATGCAGAAAAAAACTTTACAGAACACCAATTCAGCAGAGGGTAATGTCCAGCATTTAGTTTATCTCCTAGAAAATGCTGTGCTTAATCTCCGAGAAGGTCAGGAACAGATGTCGTGGCTTATAGACTTTACCGGTTTCACTTTGAACACCAACATGTCCGTCAAAACAGCTCGAGATGTAATTAACATTTTACAGAACCACTACCCAGAAAGGCTTGGTATTGCATTACTTTACAACCCACCAAGAATTTTTCAGGCATTTTGGAAGGCTGTGAAGTACTTTCTGGATCCAAAGACAGCTCAAAAGGTGAAGTTTGTGTATCCGAAGAATACCGATAGCGTAGAGCTGATGAAATCCCTTTTCGATATGGCAAATCTCCCGAGTGTATTTGGGGGAGAAGCCACTCTCAACTATGATCACGAAGAATTCTCCCGAATGATGGCTGAGGACGACGTAAGAACTGCCAAGTTTTGGGGATTCGACGAGAAGCCTTCTTATCGCCCTGTAAATGCTCAATCCGGTGCAGAAGTAGCTCCGGAGCCGACGCCGATAACGCCAGCAGCTAACTGA 1782 49.16 MAKLRVLDLAAHDYLRGIEATCWAKYAFSSIPKCDISLNNLSESFNACILPARDKPILCMFEIIRKGIMGRIVKKYEKIAQSTERLCPMISNRLAKVQHASRNWSPQFAGAAQFEVSNGTDMYAVDLERCTCTCYRWELTGIPCVHAIPCIHFMRRSPEDFVHWCYHRETYMVMYSHFLRPLNGPIEWPPVTNLDPITPPPFKRLRGMPRVRRIRDVDEAPSRTVLSRRHLNVTCWRCGSVGPNARMCEGGGQSSAGAGRGNRGRGRGGSGRSEDTFMGFRVPETAPETIASLVPETIPCRVSETVPDRVHETQIAELKASVGHLSGRTSMFCTDACLKRYLVARNWNVDKSKKMLEETIRWRVSYKPEEIRWNEVAHEGETGKVSRANFQDRFGRTVLILRPGMQKKTLQNTNSAEGNVQHLVYLLENAVLNLREGQEQMSWLIDFTGFTLNTNMSVKTARDVINILQNHYPERLGIALLYNPPRIFQAFWKAVKYFLDPKTAQKVKFVYPKNTDSVELMKSLFDMANLPSVFGGEATLNYDHEEFSRMMAEDDVRTAKFWGFDEKPSYRPVNAQSGAEVAPEPTPITPAAN 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1815772 1825431 + BLOR07289 Blo16g00041 71232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00041 593 SUPERFAMILY CRAL/TRIO N-terminal domain 311 375 IPR036273 -
Blo16g00041 593 Gene3D - 295 568 IPR036865 -
Blo16g00041 593 Pfam CRAL/TRIO, N-terminal domain 319 358 IPR011074 -
Blo16g00041 593 ProSiteProfiles Zinc finger SWIM-type profile. 123 155 IPR007527 GO:0008270
Blo16g00041 593 Pfam CRAL/TRIO domain 391 536 IPR001251 -
Blo16g00041 593 Pfam SWIM zinc finger 122 148 IPR007527 GO:0008270
Blo16g00041 593 SMART 26again6 130 157 IPR006564 GO:0008270
Blo16g00041 593 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 391 542 IPR001251 -
Blo16g00041 593 MobiDBLite consensus disorder prediction 571 593 - -
Blo16g00041 593 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 309 590 - -
Blo16g00041 593 SUPERFAMILY CRAL/TRIO domain 373 552 IPR036865 -
Blo16g00041 593 CDD SEC14 392 537 IPR001251 -
Blo16g00041 593 SMART sec14_4 379 539 IPR001251 -
Blo16g00041 593 MobiDBLite consensus disorder prediction 251 276 - -
Blo16g00041 593 PANTHER GH16843P 309 590 - -
Blo16g00041 593 SMART CRAL_TRIO_N_2 334 359 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00041 - - - zju:107424593 449.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00795 Blo16g00041 CCT
Blo05g00795 Blo16g00041 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00795 Blo-Chr5:29218156 Blo16g00041 Blo-Chr16:1815772 2.71E-138 dispersed
Blo08g00520 Blo-Chr8:14700408 Blo16g00041 Blo-Chr16:1815772 0 dispersed
Blo11g00042 Blo-Chr11:346172 Blo16g00041 Blo-Chr16:1815772 4.91E-78 dispersed
Blo12g00698 Blo-Chr12:25246157 Blo16g00041 Blo-Chr16:1815772 2.01E-82 dispersed
Blo16g00041 Blo-Chr16:1815772 Blo14g00587 Blo-Chr14:9718893 0 dispersed
Blo16g00041 Blo-Chr16:1815772 Blo15g00528 Blo-Chr15:9928452 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000335 3 0 67 7 2 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 2 3 0 0 1 9 0 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00041 Blo_Chr16 FPKM 2.73267 3.288249 2.785959 2.594862 12.666863 14.685204 14.784455 1.2322 1.393142 1.038213