Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00046 ATGGAAGTGAGAAGGCAAGATACGGAAATAGGGATGCCTACAAACTTGGGTTATGATTTGCAAAAGAGGGAGTCTTCATCCAGACTGACTTCTACACCCTTCGCTCAAACAGTGGAAGAAAAAACAAGAGATGAGACAATTCAACATGAAGAAACCAATTCCAGCCCACCTCAAACCCTAGACCAGAATCATCCTACTTATCATCTTCATCACCACCGCCATTTTCCTCACAGGCGCCAGTTGAATCCTCTACCACAATTTTCTGGGAAACCCGGAGAAGATCCACACCCCAAACGCCCAGATCTAGGGCCAGCTCCGACCACACCAGTCGCTGGAAGGTTAAACTCGAAAGCACCATCGCAACCCGCAGGTTCGACGACTTTAACTGTTTACTCTCCAGTTCGATATCGAGAATGTTTGAAGAACCATGCGGCGAGCATGGGCGGGTACGTTCTCGATGGCTGCGGAGAATTTATGCCCACCGGAGAAGAAAACAGTGTGGAAGGCTTGAAATGTGCCGCCTGCGATTGCCACCGTAACTTTCACCGGAAAGAGGTCGATGGCGGACCCTCAGTTCCTTCTTTGGCTAACTGTTACGACCCTTACAGCTCCAACAACACCACTATTCGCGGGATTGATCAAAGGTTAGTTCCCCCACCTCCCCATCTCAACCATCACAGACAAATCTCTCTCCGTCCACAGGCGCCGATGATGATGGTCTTTGGAAGTTCCGCTGGAGCGGCGGAGGAGTCTTCGAGTGAAGATCTAGCAATAGGGTATCAAGCAAAAGCATCGAAGAAGCGATTTCGTACAAAATTCACACAGGAGCAGAAAGAGAAGATGATGGAATTCGCTGAAAGATTAGGATGGAAGATTCAGAAGCATGATGAAGAAGAAGTGCAGCAATTCTGTACCGACGCAGACGTAAAGAGGCAGGTTTTCAAGGTATGGATGCATAACAACAAGCCAGCCGTAAAAAAACATCAAATGTAA 993 48.04 MEVRRQDTEIGMPTNLGYDLQKRESSSRLTSTPFAQTVEEKTRDETIQHEETNSSPPQTLDQNHPTYHLHHHRHFPHRRQLNPLPQFSGKPGEDPHPKRPDLGPAPTTPVAGRLNSKAPSQPAGSTTLTVYSPVRYRECLKNHAASMGGYVLDGCGEFMPTGEENSVEGLKCAACDCHRNFHRKEVDGGPSVPSLANCYDPYSSNNTTIRGIDQRLVPPPPHLNHHRQISLRPQAPMMMVFGSSAGAAEESSSEDLAIGYQAKASKKRFRTKFTQEQKEKMMEFAERLGWKIQKHDEEEVQQFCTDADVKRQVFKVWMHNNKPAVKKHQM 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1874806 1875798 + BLOR07294 Blo16g00046 71237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00046 330 MobiDBLite consensus disorder prediction 113 127 - -
Blo16g00046 330 MobiDBLite consensus disorder prediction 19 37 - -
Blo16g00046 330 MobiDBLite consensus disorder prediction 1 127 - -
Blo16g00046 330 Pfam ZF-HD protein dimerisation region 134 186 IPR006456 -
Blo16g00046 330 Gene3D - 251 327 - -
Blo16g00046 330 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 266 322 IPR006455 -
Blo16g00046 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 136 185 IPR006456 -
Blo16g00046 330 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 135 186 IPR006456 -
Blo16g00046 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 58 328 - -
Blo16g00046 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 328 - -
Blo16g00046 330 SUPERFAMILY Homeodomain-like 258 328 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00046 - - - jre:108987183 295.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00916 Blo16g00046 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00749 Blo-Chr5:26862729 Blo16g00046 Blo-Chr16:1874806 7.11E-49 dispersed
Blo06g00064 Blo-Chr6:1846331 Blo16g00046 Blo-Chr16:1874806 4.78E-44 dispersed
Blo11g00585 Blo-Chr11:5715242 Blo16g00046 Blo-Chr16:1874806 3.98E-47 dispersed
Blo16g00046 Blo-Chr16:1874806 Blo17g00796 Blo-Chr17:25617141 4.72E-60 dispersed
Blo03g00280 Blo-Chr3:5690317 Blo16g00046 Blo-Chr16:1874806 7.06E-57 transposed
Blo10g00390 Blo-Chr10:6597974 Blo16g00046 Blo-Chr16:1874806 1.47E-21 transposed
Blo16g00046 Blo-Chr16:1874806 Blo18g00811 Blo-Chr18:23935729 1.48E-62 wgd
Blo16g00046 Blo-Chr16:1874806 Blo04g00916 Blo-Chr4:10741087 2.34E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13362 PF04770 ZF-HD_dimer 1.10E-29 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00046 Blo_Chr16 FPKM 18.384615 16.346495 24.05723 20.561541 19.853151 14.216746 16.142954 19.189806 23.383825 24.170996