Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00047 ATGTGCATTGAACTAATGAACTTGGTCGATCGAGTATTGACAATATTTCCAGAAATAGAAGCAGCGAGGCCTAGATGCCCATCAGGAGTTCAGGCACTCTGCTCATTGAACTTCGCAATAGACAAAGCAACAAAGTTGCTTCAGAATTGTCGCGACTCCAGTAAACTTTATCTGGCGATGACAAGAGATACATATGTCAAAAGATTTCAGAGTTCAAGTAATTCGTTGGAGAACAGTTTATGCGGGATTAAAGGCATGGTGCCTATTTTGTTAGAATCGGAGATCAATGAAATAGTAAGTGATCTCAGGAAGTCGACATATCTCCTCGACTCATCTGAAGAAGAAGCTGGGAAGGCTCTGATGCAGTTGGTGAAAAAAAGCGATTCTACTTCTCCTTCTGAGGAGGATGCTTTTCGAACTGCAGCTGTGAAGCTTAACATCACTTCTCAGAAGGAAATGCTTATTGAAAAGAGATCTATTAGGAAACAACTTGGGAATGTGGATGCCAAGGATCAGAAGAGAAAAAATATATTGATGTACCTTTATAATCTTCTGAAGAAATATGGAGATTCTGTAGTTGCGGAGAACCCCGAGAGGGTCGGTGAAATGTTCGTTGACTCAGTTCCAGTTGTGAATTCATTTGATGGAGCTTTGAATCGTCCATCTATGGAAGATAAACCTCATAAAGCACGTAGGGAAAATGTCTCTAAAGCAATAACACCTGGCGGATCTGCTCCTCCTGAAGAATATAAATGTCCATTATCCTCTAAAATAATGTACGACCCTGTCATAATTGAATCTGGACAAACATATGAGAGGGTTTCGATACAGAAGTGGTTTAAAGAGGGTCATGATTCATGCCCAAAAACTGGAATGAAGTTGTCTAATCAATTGATGACCCCAAACCTTTCCTTGAAGGATTTAATTTCAAGATGGTGCTCAAATTGGGAAGTCACCATTTCAGATCCGAGTGTGGAAGCAGAAACTAAATCATGGGAATATTCATCCAACTCTATTGCTAGCTTTGGAAGTTCCATGAATGATTTTCGTCCGCACTTGGATTTTAGCAATATCTCAATGGGATCGATAGATTCAAGTTGCAATTCATATTCATTACCTCCAAAACCTGCAATTCGTTTTAGTTTGATGTCAGTGCAGACTAAGGATGATTGTTCCACACCCCAGTCTGATGCAAACCTACACGAAACGGATATAGAGTTCCCATCTAATCTTAATGAGCTTGAATGGGAGTTACAATGCAAAGTCATTGAAGATTTGAAGAATCGCACAAAGGAGAATGATGGCGTTTGTATTAGGTTGTCAGGAAATGTTGTTGAAGCGCTCACAAGATTTTTGAGGGATGCACATGCTCAACAGGACATAAGAGCCAAGAAAGATGGATCTGGCTTATTACTGACATTCTTGAGCAAAAACAGGCAAGGTGTATTGAATATACGCGAAGAAACATTGAGTTTTTTGGCCAGTTTGCTCTGTTCAGAAGTGACAGAAGAAGTTCTGTCTATCTTAGAAGTGCTGTCTTGCCAGCAACAGTGCGTATCCAAGTTTGTGGCTCCCGGAGTTCTTGCTTCAATACTCGAAATCATTGACTCTCCTATCAGAAATTTGAAGGAAAAAGCTGTTAAAATTCTATCCACTCTATCATCGAGTAATGTCGTTTGCTCCCAAATCGTTTCTCTCGGGTGCATACCAAAATTAGTTCCTTTGTTCAACGATGATGATCTTTCGGGCAACTGTATTCTTCTACTGAAAAATTCAATCGACTTTGAGGAGGCTAGAATTGCAGTAGTTGAAACAAAAGGGTGTTTTGCTTCTGTTGCACTACTTCTTGAGTCGGGCAGTCTGGAGAAGCAAGAACATGCAGTTATGATTTTCCTTTCTTTATGTTCTCAAAGAGTTCAATATTGTGAATTGCTCAGGGCTAATGACATAATCCCGTCCCTTGTAACCATATCAGTCAATGGAAGTAAGAAAGGTCGGGGGGGAGCATTAGAGTTGATTCGGCTTTTAGGAGAGGCCACCGAGAATCAACCATCTCAAAAATCCACACACAATTCCTCGAGAAACGGTAGCAACCTCCATGACATGGAAGAAAAGAAAGCACCTTCCAAGAAAGCACCGTCCAAGTTACTTGGATTCTTCAGAAAGAAATAA 2172 40.42 MCIELMNLVDRVLTIFPEIEAARPRCPSGVQALCSLNFAIDKATKLLQNCRDSSKLYLAMTRDTYVKRFQSSSNSLENSLCGIKGMVPILLESEINEIVSDLRKSTYLLDSSEEEAGKALMQLVKKSDSTSPSEEDAFRTAAVKLNITSQKEMLIEKRSIRKQLGNVDAKDQKRKNILMYLYNLLKKYGDSVVAENPERVGEMFVDSVPVVNSFDGALNRPSMEDKPHKARRENVSKAITPGGSAPPEEYKCPLSSKIMYDPVIIESGQTYERVSIQKWFKEGHDSCPKTGMKLSNQLMTPNLSLKDLISRWCSNWEVTISDPSVEAETKSWEYSSNSIASFGSSMNDFRPHLDFSNISMGSIDSSCNSYSLPPKPAIRFSLMSVQTKDDCSTPQSDANLHETDIEFPSNLNELEWELQCKVIEDLKNRTKENDGVCIRLSGNVVEALTRFLRDAHAQQDIRAKKDGSGLLLTFLSKNRQGVLNIREETLSFLASLLCSEVTEEVLSILEVLSCQQQCVSKFVAPGVLASILEIIDSPIRNLKEKAVKILSTLSSSNVVCSQIVSLGCIPKLVPLFNDDDLSGNCILLLKNSIDFEEARIAVVETKGCFASVALLLESGSLEKQEHAVMIFLSLCSQRVQYCELLRANDIIPSLVTISVNGSKKGRGGALELIRLLGEATENQPSQKSTHNSSRNGSNLHDMEEKKAPSKKAPSKLLGFFRKK 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1887921 1891090 + BLOR07295 Blo16g00047 71238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00047 723 SUPERFAMILY ARM repeat 468 677 IPR016024 -
Blo16g00047 723 MobiDBLite consensus disorder prediction 681 723 - -
Blo16g00047 723 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Blo16g00047 723 MobiDBLite consensus disorder prediction 681 696 - -
Blo16g00047 723 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 4 694 - -
Blo16g00047 723 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Blo16g00047 723 CDD RING-Ubox_PUB 250 291 IPR045210 -
Blo16g00047 723 MobiDBLite consensus disorder prediction 697 711 - -
Blo16g00047 723 Gene3D - 410 690 IPR011989 -
Blo16g00047 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 319 IPR013083 -
Blo16g00047 723 Pfam U-box domain 247 314 IPR003613 GO:0004842|GO:0016567
Blo16g00047 723 PANTHER U BOX DOMAIN-CONTAINING 4 694 - -
Blo16g00047 723 SUPERFAMILY RING/U-box 245 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00047 - - - qsu:111998800 655.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00915 Blo16g00047 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00047 Blo-Chr16:1887921 Blo16g01194 Blo-Chr16:40439448 4.71E-77 dispersed
Blo01g01566 Blo-Chr1:55421353 Blo16g00047 Blo-Chr16:1887921 4.57E-82 wgd
Blo16g00047 Blo-Chr16:1887921 Blo04g00915 Blo-Chr4:10711448 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00047 Blo_Chr16 FPKM 23.950699 23.4526 22.944696 24.555397 22.769262 21.671776 23.44173 30.415966 29.304512 28.824982