Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00048 ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGCGAAGGGAGGCATTGGCGCGGTCATTTCAGGTCACACATTGCCCCCGACGAAGCACCTTCCCCATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTCCTAGACATCATACGCAGGGTAGAACAGAGCGAAACCTCCTGGCCTGCTCGGACCGTTGTCATTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCTGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCCGGCCACCGAGAGTTTCCCTTGCAATGTTTTATCAAAAGGGATAGAGCAACTTCTACCTATCTCTTGTACTTTGGTCTGGTACCCTTAATCTTATGGGATATTTATTCGTTTTTTGTTGCTTTGACAGTGGAGAACGAGAGCGATAAAATGCTGTTAGCAGCCAAGAAGATCAGAAGGGCGACAGGCACAGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGAGGCAAGTCTGCCATGAAAGATCTGCACATTTTCTTCACTCAAGTCAGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGATGCGCCAATTCAATTTCATAGCAAATCAGCTAGAAGGTTCCACTCCAAGCAAGTCTCTCCTAGAGTTCCAGCCTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATTATGCACTCAATTCCTGTCACTTCGATTCAAGAGGGGGGCTCGGCCCCAACCCCGACATCGTTTACGTACTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGGGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTAGCCCGTGTTTCGGGAGAGGCATTGGTTCTGAAGAACAAGGCCCCGAGGTGGCACGAGCAGCTGCAGTGCTGGTGCTTAAACTTTAAAGGGCGCGTAACTGTGGCCTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCCCATAACGTCTCGGCCGAAGAGGTAGAAAAGGTGATTTTGCAGTTTGGAAAGATAGGGAAAGACATCTTCACAATGGACTACCGCTACCCACTATCCGCTTTTCAAGCATTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCGGCCTGCGAATGA 1323 47.85 MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSHIAPDEAPSPSLVIQQSQWANLPPELLLDIIRRVEQSETSWPARTVVIFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREFPLQCFIKRDRATSTYLLYFGLVPLILWDIYSFFVALTVENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLRQVCHERSAHFLHSSQSNFLGTKFTIYDSQPPCDAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFTYSMEEQISAPLGSKGKEPFIDFRSLSLSESLARVSGEALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEVEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1891899 1893452 - BLOR07296 Blo16g00048 71239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00048 440 Pfam F-box domain 54 101 IPR001810 GO:0005515
Blo16g00048 440 PANTHER TUBBY-RELATED 1 440 - -
Blo16g00048 440 Pfam Tub family 115 435 IPR000007 -
Blo16g00048 440 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Blo16g00048 440 PRINTS Tubby superfamily signature 183 199 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 214 238 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 368 384 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 350 367 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 263 290 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 418 440 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 397 416 IPR000007 -
Blo16g00048 440 ProSitePatterns Tub family signature 2. 425 440 IPR018066 -
Blo16g00048 440 SUPERFAMILY Tubby C-terminal domain-like 103 440 IPR025659 -
Blo16g00048 440 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Blo16g00048 440 ProSitePatterns Tub family signature 1. 368 381 IPR018066 -
Blo16g00048 440 Gene3D Tubby Protein; Chain A 112 440 IPR025659 -
Blo16g00048 440 Gene3D - 49 103 - -
Blo16g00048 440 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00048 K19600 TUB, TULP; tubby and related proteins - csv:101205595 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00905 Blo-Chr12:27242887 Blo16g00048 Blo-Chr16:1891899 0 dispersed
Blo15g00775 Blo-Chr15:26557088 Blo16g00048 Blo-Chr16:1891899 1.54E-157 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo16g00048 Blo-Chr16:1891899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00775 . 1 445 TUB Transcription Factor Family AT1G76900 67.4 4.2e-167 584.7
Blo02g00865 . 1 422 TUB Transcription Factor Family AT1G76900 69.5 4.2e-167 584.7
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT1G76900 68.6 4.2e-167 584.7
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT1G76900 68.1 4.7e-166 581.3
Blo13g00300 . 12 437 TUB Transcription Factor Family AT1G76900 66.6 2.9e-160 562.0
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT1G76900 50.5 8.4e-115 411.0
Blo02g00865 . 169 422 TUB Transcription Factor Family AT1G25280 73.8 1.2e-100 363.2
Blo15g00775 . 192 445 TUB Transcription Factor Family AT1G25280 73.0 2.9e-99 358.6
Blo12g00786 BCT 173 427 TUB Transcription Factor Family AT1G25280 66.1 3.7e-94 341.7
Blo01g01728 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 6.9e-93 337.4
Blo13g00300 . 187 437 TUB Transcription Factor Family AT1G25280 67.8 9.3e-90 327.0
Blo01g01567 BCT 176 412 TUB Transcription Factor Family AT1G25280 53.6 2.4e-69 259.2
Blo01g00087 . 156 384 TUB Transcription Factor Family AT1G25280 53.2 1.2e-68 256.9
Blo16g00048 . 189 440 TUB Transcription Factor Family AT1G25280 51.2 9.4e-66 247.3
Blo12g00905 BCT 174 410 TUB Transcription Factor Family AT1G25280 52.6 1.2e-65 246.9
Blo01g00087 . 98 384 TUB Transcription Factor Family AT5G18680 61.3 1.8e-94 342.8
Blo02g00865 . 112 422 TUB Transcription Factor Family AT5G18680 54.0 2.1e-82 302.8
Blo01g01728 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.7 6.1e-82 301.2
Blo13g00300 . 123 437 TUB Transcription Factor Family AT5G18680 50.3 5.7e-80 294.7
Blo01g01567 BCT 113 412 TUB Transcription Factor Family AT5G18680 50.3 2.0e-77 286.2
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G18280 58.6 8.2e-135 477.2
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G18280 55.0 1.4e-121 433.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G18280 56.1 2.6e-120 429.1
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G18280 53.0 1.2e-117 420.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 2.0e-117 419.5
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G18280 52.2 3.8e-116 415.2
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G18280 53.8 2.0e-112 402.9
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G18280 50.3 7.5e-112 401.0
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G47900 67.2 7.1e-158 553.9
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G47900 57.0 5.5e-134 474.6
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G47900 56.2 2.3e-132 469.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Blo15g00775 . 1 445 TUB Transcription Factor Family AT2G47900 53.8 8.2e-130 460.7
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G47900 56.6 1.1e-129 460.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G47900 55.1 5.3e-121 431.4
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G47900 52.4 6.1e-117 417.9
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G47900 52.9 1.7e-114 409.8
Blo10g00732 . 48 377 TUB Transcription Factor Family AT2G47900 50.8 1.5e-99 360.1
Blo06g00639 . 80 305 TUB Transcription Factor Family AT1G16070 59.1 3.6e-71 265.4
Blo01g01728 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 3.0e-147 518.5
Blo12g00786 BCT 65 427 TUB Transcription Factor Family AT1G43640 66.4 2.0e-143 505.8
Blo02g00865 . 65 422 TUB Transcription Factor Family AT1G43640 67.4 5.8e-143 504.2
Blo15g00775 . 64 445 TUB Transcription Factor Family AT1G43640 64.2 1.4e-141 499.6
Blo13g00300 . 76 437 TUB Transcription Factor Family AT1G43640 63.7 2.6e-135 478.8
Blo01g00087 . 47 384 TUB Transcription Factor Family AT1G43640 51.9 1.7e-102 369.8
Blo12g00905 BCT 64 410 TUB Transcription Factor Family AT1G43640 50.4 2.0e-98 356.3
Blo01g01567 BCT 31 412 TUB Transcription Factor Family AT1G47270 61.8 4.9e-132 468.0
Blo12g00905 BCT 31 410 TUB Transcription Factor Family AT1G47270 63.3 4.2e-131 464.9
Blo16g00048 . 1 440 TUB Transcription Factor Family AT1G47270 54.5 3.2e-123 438.7
Blo01g01728 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.4e-115 413.3
Blo12g00786 BCT 31 427 TUB Transcription Factor Family AT1G47270 52.2 2.8e-111 399.1
Blo02g00865 . 48 422 TUB Transcription Factor Family AT1G47270 54.3 5.3e-110 394.8
Blo13g00300 . 42 437 TUB Transcription Factor Family AT1G47270 51.4 2.1e-106 382.9
Blo10g00732 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 5.8e-146 514.2
Blo01g00087 . 98 384 TUB Transcription Factor Family AT3G06380 61.1 2.8e-92 335.5
Blo02g00865 . 116 422 TUB Transcription Factor Family AT3G06380 52.9 1.0e-81 300.4
Blo01g01728 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 2.7e-79 292.4
Blo01g01567 BCT 117 412 TUB Transcription Factor Family AT3G06380 51.3 1.8e-78 289.7
Blo12g00905 BCT 115 410 TUB Transcription Factor Family AT3G06380 52.2 2.8e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13363 PF01167 Tub 1.00E-95 CL0395 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00048 Blo_Chr16 FPKM 23.163361 21.559887 22.375996 22.194553 61.432785 52.73698 61.94569 16.099039 17.144949 17.498392