Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo16g00048 | ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGCGAAGGGAGGCATTGGCGCGGTCATTTCAGGTCACACATTGCCCCCGACGAAGCACCTTCCCCATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTCCTAGACATCATACGCAGGGTAGAACAGAGCGAAACCTCCTGGCCTGCTCGGACCGTTGTCATTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCTGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCCGGCCACCGAGAGTTTCCCTTGCAATGTTTTATCAAAAGGGATAGAGCAACTTCTACCTATCTCTTGTACTTTGGTCTGGTACCCTTAATCTTATGGGATATTTATTCGTTTTTTGTTGCTTTGACAGTGGAGAACGAGAGCGATAAAATGCTGTTAGCAGCCAAGAAGATCAGAAGGGCGACAGGCACAGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGAGGCAAGTCTGCCATGAAAGATCTGCACATTTTCTTCACTCAAGTCAGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGATGCGCCAATTCAATTTCATAGCAAATCAGCTAGAAGGTTCCACTCCAAGCAAGTCTCTCCTAGAGTTCCAGCCTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATTATGCACTCAATTCCTGTCACTTCGATTCAAGAGGGGGGCTCGGCCCCAACCCCGACATCGTTTACGTACTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGGGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTAGCCCGTGTTTCGGGAGAGGCATTGGTTCTGAAGAACAAGGCCCCGAGGTGGCACGAGCAGCTGCAGTGCTGGTGCTTAAACTTTAAAGGGCGCGTAACTGTGGCCTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCCCATAACGTCTCGGCCGAAGAGGTAGAAAAGGTGATTTTGCAGTTTGGAAAGATAGGGAAAGACATCTTCACAATGGACTACCGCTACCCACTATCCGCTTTTCAAGCATTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCGGCCTGCGAATGA | 1323 | 47.85 | MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSHIAPDEAPSPSLVIQQSQWANLPPELLLDIIRRVEQSETSWPARTVVIFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREFPLQCFIKRDRATSTYLLYFGLVPLILWDIYSFFVALTVENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLRQVCHERSAHFLHSSQSNFLGTKFTIYDSQPPCDAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFTYSMEEQISAPLGSKGKEPFIDFRSLSLSESLARVSGEALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEVEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1891899 | 1893452 | - | BLOR07296 | Blo16g00048 | 71239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo16g00048 | 440 | Pfam | F-box domain | 54 | 101 | IPR001810 | GO:0005515 | |
Blo16g00048 | 440 | PANTHER | TUBBY-RELATED | 1 | 440 | - | - | |
Blo16g00048 | 440 | Pfam | Tub family | 115 | 435 | IPR000007 | - | |
Blo16g00048 | 440 | ProSitePatterns | EF-hand calcium-binding domain. | 385 | 397 | IPR018247 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 183 | 199 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 214 | 238 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 368 | 384 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 350 | 367 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 263 | 290 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 418 | 440 | IPR000007 | - | |
Blo16g00048 | 440 | PRINTS | Tubby superfamily signature | 397 | 416 | IPR000007 | - | |
Blo16g00048 | 440 | ProSitePatterns | Tub family signature 2. | 425 | 440 | IPR018066 | - | |
Blo16g00048 | 440 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 440 | IPR025659 | - | |
Blo16g00048 | 440 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515 | |
Blo16g00048 | 440 | ProSitePatterns | Tub family signature 1. | 368 | 381 | IPR018066 | - | |
Blo16g00048 | 440 | Gene3D | Tubby Protein; Chain A | 112 | 440 | IPR025659 | - | |
Blo16g00048 | 440 | Gene3D | - | 49 | 103 | - | - | |
Blo16g00048 | 440 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 440 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo12g00905 | Blo-Chr12:27242887 | Blo16g00048 | Blo-Chr16:1891899 | 0 | dispersed | |
Blo15g00775 | Blo-Chr15:26557088 | Blo16g00048 | Blo-Chr16:1891899 | 1.54E-157 | dispersed | |
Blo01g01567 | Blo-Chr1:55426131 | Blo16g00048 | Blo-Chr16:1891899 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13363 | PF01167 | Tub | 1.00E-95 | CL0395 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo16g00048 | K19600 | - | csv:101205595 | 631.713 |