Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00048 ATGTCCTTCAAAAGCATTGTCCGCGAGATAAAGGAGATGAGAGATGGAATCGGAAGCATCTCAAGGAGAGGCGAAGGGAGGCATTGGCGCGGTCATTTCAGGTCACACATTGCCCCCGACGAAGCACCTTCCCCATCTCTTGTAATTCAACAAAGCCAGTGGGCTAATCTTCCTCCTGAACTACTCCTAGACATCATACGCAGGGTAGAACAGAGCGAAACCTCCTGGCCTGCTCGGACCGTTGTCATTTTCTGTGCATCGGTTTGTAGATCATGGAGGCTCATTACTAAGGAGATAGTGAAAACTCCTGAGCAATGTGGGAGGCTCACATTTCCCATCTCATTGAAACAGCCCGGCCACCGAGAGTTTCCCTTGCAATGTTTTATCAAAAGGGATAGAGCAACTTCTACCTATCTCTTGTACTTTGGTCTGGTACCCTTAATCTTATGGGATATTTATTCGTTTTTTGTTGCTTTGACAGTGGAGAACGAGAGCGATAAAATGCTGTTAGCAGCCAAGAAGATCAGAAGGGCGACAGGCACAGAGTTTGTCATATCTTTAGTTGCCGATGATTTCTCTCGAGCCAGCAGTACATATGTCGGTAAACTGAGGCAAGTCTGCCATGAAAGATCTGCACATTTTCTTCACTCAAGTCAGTCCAATTTTTTGGGTACAAAGTTCACCATTTACGACAGCCAACCTCCATGTGATGCGCCAATTCAATTTCATAGCAAATCAGCTAGAAGGTTCCACTCCAAGCAAGTCTCTCCTAGAGTTCCAGCCTGTAACTACACCATAAGTACGATCTCCTACGAACTCAATGTTCTCCGCACGAGAGGGCCTCGGAGAATGCAGTGCATTATGCACTCAATTCCTGTCACTTCGATTCAAGAGGGGGGCTCGGCCCCAACCCCGACATCGTTTACGTACTCGATGGAGGAGCAAATATCTGCCCCCTTGGGCTCAAAAGGGAAGGAACCATTTATCGACTTTAGATCGTTGAGCCTCTCGGAATCACTAGCCCGTGTTTCGGGAGAGGCATTGGTTCTGAAGAACAAGGCCCCGAGGTGGCACGAGCAGCTGCAGTGCTGGTGCTTAAACTTTAAAGGGCGCGTAACTGTGGCCTCGGTCAAGAATTTTCAACTTGTTGCGGATGTTGATGAATCCCATAACGTCTCGGCCGAAGAGGTAGAAAAGGTGATTTTGCAGTTTGGAAAGATAGGGAAAGACATCTTCACAATGGACTACCGCTACCCACTATCCGCTTTTCAAGCATTTGCAATCTGCTTGAGCAGCTTCGACACCAAACCGGCCTGCGAATGA 1323 47.85 MSFKSIVREIKEMRDGIGSISRRGEGRHWRGHFRSHIAPDEAPSPSLVIQQSQWANLPPELLLDIIRRVEQSETSWPARTVVIFCASVCRSWRLITKEIVKTPEQCGRLTFPISLKQPGHREFPLQCFIKRDRATSTYLLYFGLVPLILWDIYSFFVALTVENESDKMLLAAKKIRRATGTEFVISLVADDFSRASSTYVGKLRQVCHERSAHFLHSSQSNFLGTKFTIYDSQPPCDAPIQFHSKSARRFHSKQVSPRVPACNYTISTISYELNVLRTRGPRRMQCIMHSIPVTSIQEGGSAPTPTSFTYSMEEQISAPLGSKGKEPFIDFRSLSLSESLARVSGEALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVADVDESHNVSAEEVEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1891899 1893452 - BLOR07296 Blo16g00048 71239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00048 440 Pfam F-box domain 54 101 IPR001810 GO:0005515
Blo16g00048 440 PANTHER TUBBY-RELATED 1 440 - -
Blo16g00048 440 Pfam Tub family 115 435 IPR000007 -
Blo16g00048 440 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Blo16g00048 440 PRINTS Tubby superfamily signature 183 199 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 214 238 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 368 384 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 350 367 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 263 290 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 418 440 IPR000007 -
Blo16g00048 440 PRINTS Tubby superfamily signature 397 416 IPR000007 -
Blo16g00048 440 ProSitePatterns Tub family signature 2. 425 440 IPR018066 -
Blo16g00048 440 SUPERFAMILY Tubby C-terminal domain-like 103 440 IPR025659 -
Blo16g00048 440 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Blo16g00048 440 ProSitePatterns Tub family signature 1. 368 381 IPR018066 -
Blo16g00048 440 Gene3D Tubby Protein; Chain A 112 440 IPR025659 -
Blo16g00048 440 Gene3D - 49 103 - -
Blo16g00048 440 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00905 Blo-Chr12:27242887 Blo16g00048 Blo-Chr16:1891899 0 dispersed
Blo15g00775 Blo-Chr15:26557088 Blo16g00048 Blo-Chr16:1891899 1.54E-157 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo16g00048 Blo-Chr16:1891899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13363 PF01167 Tub 1.00E-95 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00048 K19600 - csv:101205595 631.713