Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00049 ATGGCAAACGGATTCTTCTCTGTTTTAGCCTTTTTCTTCTTTGGGTTCATTGGCTTAGCCACATTTCCTGCAGAAGCTGCAATAAAGAGTTATCAGTTTGATGTTCAAGTGAAGAATGTGAGTAGATTATGCCATGCAAAACCGATCGTAACAGTCAATGGAAGGTTTCCAGGGCCAACAATCTATGCAAGAGAAGGAGACAGAGTTACCGTCAATGTCACAAACCATGCACAATATAACATCTCTATTCACTGGCATGGATTGAAGCAATACAGAAATGGGTGGGCAGATGGACCAGCTTACATTACACAATGTCCCATTCAAACAGGGCATAGCTATGCATACGACTTCAACGTGACAGGGCAAAGAGGAACCTTATGGTGGCATGCCCATATTCTTTGGCTGAGGGCTACAGTTTATGGCGCAATTGTAATCATGCCTCAACAAGGAACACCATTTCCTTTCCCTCAGCCAAATAGAGAGTTCGAACTTATATTAGGAGAATGGTGGAATAATGATGTGGAAGAAATCGAGAAGCAAGGAAGCATGATGGGGTTGCCACCAAACATGTCCGATGCACATACAATCAATGGGAAGCCAGGACCATTGTTTCCATGCTCTGAAAAACACACATACGCTGTGGAGGTGGAACAAGGAAAAACATACCTTCTGAGAATCATCAATGCTGCTCTCAATGATGAGCTTTTCTTTGCCATTGCGGGCCATAACTTGACAGTTGTGGAGGTCGATGCAGTTTATACAAAACCATTCACAACGCAAGCTATTCTAATTGCACCAGGCCAGACCACAACCGTCTTACTTCAAGCAAACCAAGTTCCAAACAGATATTTCATGGCTACAAGGCCTTTCCTTGATGTTCCACTTGCCATTGATAATAAAACAGCCACTGGAATTCTTCAATACAAAGGCATTCCAAACACTGTTTTTCCTATCCTCCCTCAATTACCTGCCCCTAACAACACAGATTTCGCTTTAGGCTACAACAAGAAGCTCAAGAGCTTAAACTCACCCCAGTTTCCGGCTAATGTTCCTCTTAAGGTAGATCGAAAGCTCTTTCAAGCCATCGGTTTAGGCATGAATGCTTGCCCCACATGCTTGAATGGAACCAGATTGGTTGCTTCTTTGAACAACATCTCCTTTGTGATGCCTAGTGTTGGTCTTCTTCAAGCTCACTATTTCAACATCAAAGGGGTATTCAGAACTGATTTCCCCGACAAACCTATGACGCCTTTCAACTACACTGGTGCACCCCTCAGTGCTAATCTTGGCACTACAGTCGGCACAAGGCTGAGCAAGCTTGCATTTAATTCTACTGTTGAACTGGTCCTTCAAGATACCAATCTTCTGACAGTAGAGTCACACCCATTTCATCTCCATGGCTACAACTTCTTCGTCGTTGGGACAGGAATTGGAAATTTTGATCCTGTCAAAGACCCACTAACGTATAACTTGGTCGATCCAATTGAGAGAAATACCGTTGGAGTTCCCACTGGAGGCTGGACAGCCATTCGATTTCAGGCCAATAATCCAGGAGTTTGGTTCATGCATTGTCATCTGGAGCTTCATACAGGTTGGGGTTTAAAGACTGCATTCGTAGTGGAAAACGGACCAGGGAAGGATCATACCATCCATCCTCCACCCAAGGATCTTCCACAATGCTAG 1683 44.03 MANGFFSVLAFFFFGFIGLATFPAEAAIKSYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYAREGDRVTVNVTNHAQYNISIHWHGLKQYRNGWADGPAYITQCPIQTGHSYAYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQQGTPFPFPQPNREFELILGEWWNNDVEEIEKQGSMMGLPPNMSDAHTINGKPGPLFPCSEKHTYAVEVEQGKTYLLRIINAALNDELFFAIAGHNLTVVEVDAVYTKPFTTQAILIAPGQTTTVLLQANQVPNRYFMATRPFLDVPLAIDNKTATGILQYKGIPNTVFPILPQLPAPNNTDFALGYNKKLKSLNSPQFPANVPLKVDRKLFQAIGLGMNACPTCLNGTRLVASLNNISFVMPSVGLLQAHYFNIKGVFRTDFPDKPMTPFNYTGAPLSANLGTTVGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKDPLTYNLVDPIERNTVGVPTGGWTAIRFQANNPGVWFMHCHLELHTGWGLKTAFVVENGPGKDHTIHPPPKDLPQC 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1896281 1898692 + BLOR07297 Blo16g00049 71240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00049 560 TIGRFAM laccase: laccase 26 560 IPR017761 GO:0046274|GO:0048046|GO:0052716
Blo16g00049 560 Gene3D - 19 147 IPR008972 -
Blo16g00049 560 Gene3D - 369 560 IPR008972 -
Blo16g00049 560 CDD CuRO_3_LCC_plant 405 543 IPR034289 GO:0005507
Blo16g00049 560 Pfam Multicopper oxidase 164 310 IPR001117 -
Blo16g00049 560 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Blo16g00049 560 PANTHER LACCASE 8 560 - -
Blo16g00049 560 ProSitePatterns Multicopper oxidases signature 1. 518 538 IPR033138 -
Blo16g00049 560 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Blo16g00049 560 CDD CuRO_2_LCC_plant 164 308 IPR034285 -
Blo16g00049 560 ProSitePatterns Multicopper oxidases signature 2. 523 534 IPR002355 GO:0005507
Blo16g00049 560 SUPERFAMILY Cupredoxins 21 172 IPR008972 -
Blo16g00049 560 Pfam Multicopper oxidase 411 542 IPR011706 GO:0005507|GO:0016491
Blo16g00049 560 SUPERFAMILY Cupredoxins 351 560 IPR008972 -
Blo16g00049 560 PANTHER MULTI-COPPER OXIDASE 8 560 IPR045087 -
Blo16g00049 560 SUPERFAMILY Cupredoxins 155 333 IPR008972 -
Blo16g00049 560 Gene3D - 159 343 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00049 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101218482 1006.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00914 Blo16g00049 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00260 Blo-Chr9:11507880 Blo16g00049 Blo-Chr16:1896281 0 dispersed
Blo13g00845 Blo-Chr13:31099945 Blo16g00049 Blo-Chr16:1896281 2.55E-180 dispersed
Blo14g00143 Blo-Chr14:1065063 Blo16g00049 Blo-Chr16:1896281 0 dispersed
Blo01g01749 Blo-Chr1:57224568 Blo16g00049 Blo-Chr16:1896281 1.98E-171 transposed
Blo12g00868 Blo-Chr12:26891520 Blo16g00049 Blo-Chr16:1896281 1.10E-173 transposed
Blo16g00049 Blo-Chr16:1896281 Blo04g00914 Blo-Chr4:10706325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g988 Blo04g00914 Blo16g00049 . . Bpe15g00426 Bpe13g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1630 Cone9ag1555 . . . . . . Bda11g01862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00049 Blo_Chr16 FPKM 20.782106 22.747898 3.474574 3.541522 2.41461 1.58604 2.132381 0.21731 0.433001 0.268035