Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00061 ATGACCAGCGGTAACCGGTATAGAAGTTTTGGTTCAGAGGCAGCCGTAATTCAGAGGAATCCATCATTTTCAGTGTTGAATTCTGAGGATATTTACTATTTTAAGAGTGTTTTAGGAGAGAAAAATGTTGTTCGGGATGAAGATTGGCTGCTGACTGCCAACACAGACTGGATGCGGAAGTACAAAGGCTCAAGTAAGCTACTGCTGCTACCTAGGAGCACTGAGGAGGTTTCTCAGATTCTTCGGTACTGTAATTCCAGATGTCTTGCCGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTGGGAGGAAGTGTTCCTGTTTATGATGAAGTTATTATAAATCTTGGCTCGATGAATAACATTATCTCCTTTGACAAGGTTAGTGGTATACTAGTTTGTGAAGCAGGATGCATATTAGAAAATCTGGCGTCATTCCTGGAAAACGAAGGATTCACTATGCCACTGGACTTAGGAGCAAAAGGAAGCTGCCATATTGGTGGAAATGTTTCCACTAATGCTGGTGGTTTGCGCTTAGTTCGATATGGATCACTCCATGGAAATGTACTTGGTCTTGAAGCTATATTAGCAGATGGTTCTGTGCTTGACATGCTTGGAACTCTACGGAAAGATAATACTGGGTATGACTTAAAGCATTTGTTTATTGGTACTGAAGGCACTTTGGGAATTATAACTAAAATTTCCATACTTACCCCTGCAAAGCTGCCCTCTACTAATGTGGCCTTTCTTGCATGCGAAGATTATTTGAGCTGTCAGAAACTATTAGTGGAAGCAAAGATGAAACTTGGGGCGATTCTGTCTGCCTTCGAATTTCTAGATTACGCATCGTTGAATTTGGTTCTAAACCACTTAGAAGGTGTCCGGAATCCATTCCCTCCATCAATGCACAACTTTTATGTTTTAATTGAGACAACAGGAAGTGATGAATCATATGACAGAGAAAAGCTTGAGGGATTTCTTCTCCGTTCATTGGAAGGTGGTTTGATTTCTGATGGTGTTCTTGCACAAGACATAAACCAAGCATTCTCTTTTTGGCGTATTCGTGAGGGTATACCAGAGGCATTGATGAAAGCAGGAGCTGTGTATAAATATGATTTGTCATTACCTATTGAAGTTATGTATGACCTTGTTGAGGACATGCGAGCAAGACTCGGCTGCACGGCTAACGTGATTGGATACGGGCACCTTGGAGACGGAAATTTGCATCTTAATATTTCAACTCCTCAGTTCAAAGCCGAGATTTTAGATGAAATTGAACCGTTCGTTTACGAGTGGACTTCCAAGCACAGGGGAAGCATCAGTGCAGAGCATGGCCTTGGACTGATGAAAGCCAATAAGATATTCTACAGCAAGTCAAAGGAAACTGCTTTGAGTAAAATTGCTAGCAATCGGCTTCAGAAGGAGCTCAAGGAGTGGCAGGTCAATTCTCCTTCTGGCTTCAAGCATAAAGTCACTGATAATATGCAAAGATGGGTCATTGAGGTCAATGGAGCTGCAGGGACTCTTTATGCAAATGAAATTTACCAACTTCAAGTGGATTTTCCTGAGAATTATCCCATGGAAGCTCCCCAGGTAATATTTATGCATCCAGCTCCGCTGCATCCTCATATATACAGCAATGGGCACATTTGCTTAGATATTTTATACGATTCATGGTCCCCTGCTATGACTGTGAGTTCCATCTGTATAAGCATTCTCTCAATGCTTTCGAGCTCCACTGCAAAGGAACAGCCGGAAGATAACGACCGATATGTTAGGAATTGTAGGAATGGCAGATCACCCAAAGAGACGAGGTGGTGGTTCCATGATGATAAAGTATAG 1839 42.09 MTSGNRYRSFGSEAAVIQRNPSFSVLNSEDIYYFKSVLGEKNVVRDEDWLLTANTDWMRKYKGSSKLLLLPRSTEEVSQILRYCNSRCLAVVPQGGNTGLVGGSVPVYDEVIINLGSMNNIISFDKVSGILVCEAGCILENLASFLENEGFTMPLDLGAKGSCHIGGNVSTNAGGLRLVRYGSLHGNVLGLEAILADGSVLDMLGTLRKDNTGYDLKHLFIGTEGTLGIITKISILTPAKLPSTNVAFLACEDYLSCQKLLVEAKMKLGAILSAFEFLDYASLNLVLNHLEGVRNPFPPSMHNFYVLIETTGSDESYDREKLEGFLLRSLEGGLISDGVLAQDINQAFSFWRIREGIPEALMKAGAVYKYDLSLPIEVMYDLVEDMRARLGCTANVIGYGHLGDGNLHLNISTPQFKAEILDEIEPFVYEWTSKHRGSISAEHGLGLMKANKIFYSKSKETALSKIASNRLQKELKEWQVNSPSGFKHKVTDNMQRWVIEVNGAAGTLYANEIYQLQVDFPENYPMEAPQVIFMHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKEQPEDNDRYVRNCRNGRSPKETRWWFHDDKV 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1956089 1964436 - BLOR07309 Blo16g00061 71252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00061 612 Pfam FAD linked oxidases, C-terminal domain 243 461 IPR004113 GO:0003824|GO:0050660
Blo16g00061 612 Gene3D Ubiquitin Conjugating Enzyme 464 612 IPR016135 -
Blo16g00061 612 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 539 554 IPR023313 -
Blo16g00061 612 SUPERFAMILY UBC-like 449 590 IPR016135 -
Blo16g00061 612 SUPERFAMILY FAD-binding/transporter-associated domain-like 32 237 IPR036318 GO:0050660
Blo16g00061 612 Gene3D - 15 116 IPR016167 -
Blo16g00061 612 Gene3D - 242 363 - -
Blo16g00061 612 Pfam FAD binding domain 67 202 IPR006094 GO:0050660
Blo16g00061 612 Gene3D - 365 443 - -
Blo16g00061 612 Pfam Ubiquitin-conjugating enzyme 470 605 IPR000608 -
Blo16g00061 612 Gene3D - 119 238 IPR016169 -
Blo16g00061 612 ProSiteProfiles PCMH-type FAD-binding domain profile. 61 240 IPR016166 GO:0071949
Blo16g00061 612 CDD UBCc 468 568 IPR000608 -
Blo16g00061 612 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 10 461 - -
Blo16g00061 612 SUPERFAMILY FAD-linked oxidases, C-terminal domain 214 454 IPR016164 GO:0003824|GO:0050660
Blo16g00061 612 SMART ubc_7 469 612 - -
Blo16g00061 612 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 466 612 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00061 K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39] - jre:108992030 781.171
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00146 Blo16g00061 CCT
Blo06g00146 Blo16g00061 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00061 Blo-Chr16:1956089 Blo15g00379 Blo-Chr15:5286804 7.05E-21 dispersed
Blo06g00146 Blo-Chr6:5745917 Blo16g00061 Blo-Chr16:1956089 7.49E-69 transposed
Blo07g01292 Blo-Chr7:33142845 Blo16g00061 Blo-Chr16:1956089 1.06E-37 transposed
Blo01g01578 Blo-Chr1:55586351 Blo16g00061 Blo-Chr16:1956089 1.60E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1050 . Blo16g00061 . Bda10g00150 . Bpe13g00430 . Bma15g00984 . Cmo16g00693 . . . . . . . . . . . . . . . . . . . . . Cone8ag0829 Cone12ag0782 . . . . Chy07g01261 . . Blo06g00146 Bda11g01849 . Bpe10g00132 . . Bma06g00109 . . . Cma16g00635 . . . . . . . . . . . . Cla07g00833 Cam07g0903 Cec07g0955 Cco07g0945 Clacu07g0876 Cmu07g0877 Cre07g1239 Lsi07g00235 Csa04g00542 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00061 Blo_Chr16 FPKM 0.456326 0.468892 2.720255 2.390427 1.699826 1.871381 2.00779 2.441548 1.819425 2.199175