Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00071 ATGGCTTCTGGTGGGGCTTGTAAGCGGGTGGGCCAACTGAGGGCAAGTTCAGGTATTGGTAGCGTAAATGGGTTTAAACGATTAGGAGCTTCTAAATTGACGTATGCGTTTGAAAGGGAAATCCATGATTTGTCTGCGACTTCGTCGTCCCCAACCTTGGCTTTGATTTCTCGGTTCAGACATGGAGATTCTAGACATTTATCTCATCTTGTCAACTCGAACGGAAAGAGACTGTTTCTCGTCGACACTTTAGCCCTTGTTAGGAAATTGGAAGGACAAGGCGTGCCGTCTCAGCAAGCAGAGGCTATTACAGCTGCCATAACCGAAGTCTTGAATGATAGCTTGGAAAATGTGTCTAGTTCTTTCGTTTCAAAAGCAGAAATGCAGAAAATTGAAATGATTCAAGAATCCAATTTATCCAAATTCAAATCTGAAGTCCAAAGCTCGCAGGGCAATCATTTCTCTTTATTAGGACACGAGACTGAAAAACTCCGGAACGACATCGAGAAAATGCGCAGTGAACTGAGGTACGAAATTGACAAAGTTACTGCCGGGCAGCGGTTGGATTTGAATCTTGAAAGAGGGAGGATAAGGGACGAATTAGCTAATCAGAATGCTGAAACGACAAACTTAACCAACAAACTTGACAGGGAAATTCATGCACTAAGAGCTCAATTGGAAGCTGCAAAGTATGAGGTGATTAAATACTGCATAGGCACTCTTGTTTCTATTTCTGCTGTTGGTCTGGCTGTCCTCCGGATCTTGATGTAG 771 43.32 MASGGACKRVGQLRASSGIGSVNGFKRLGASKLTYAFEREIHDLSATSSSPTLALISRFRHGDSRHLSHLVNSNGKRLFLVDTLALVRKLEGQGVPSQQAEAITAAITEVLNDSLENVSSSFVSKAEMQKIEMIQESNLSKFKSEVQSSQGNHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAQLEAAKYEVIKYCIGTLVSISAVGLAVLRILM 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2061418 2063972 - BLOR07319 Blo16g00071 71262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00071 256 PANTHER FMP32-LIKE PROTEIN 21 256 - -
Blo16g00071 256 PANTHER UNCHARACTERIZED 21 256 IPR024461 -
Blo16g00071 256 Coils Coil 198 232 - -
Blo16g00071 256 Gene3D - 82 182 - -
Blo16g00071 256 Pfam Coiled-coil domain-containing protein 90-like 81 255 IPR024461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00071 - - - csv:101222017 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00332 Blo-Chr12:18974155 Blo16g00071 Blo-Chr16:2061418 7.28E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1075 . Blo16g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00531 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002946 1 0 2 2 2 1 2 1 1 1 0 1 2 1 1 2 1 3 2 1 1 1 2 2 2 1 2 3 8 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00071 Blo_Chr16 FPKM 3.215709 3.854177 0.84395 0.255091 0.566517 0.0 0.664324 1.050808 1.166475 1.076005