Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00072 ATGGAAGTTGATGAACAACCTGCTTTGGGATTGCGTAAAGCTCTTATTCATGATGAAGGGTCGACCCAGCTGGGGGACCTGCGGATTGACAATTCCGTCCCCTGCTTGGAGCTTGTGGATGTCGATCACACCCGAACCTCACGTGATATGGACTATTCCCAGATTCTTGGAGGTTCTGACTCTGTTCCGGCTGAAGGCGCGGATGATAGGGCGGCTGCAATGGGTGCCCCTTTAGCGGAAATTGAGGTGAAGGTGAGGGCTCAGGAGAATGGTTTGGGTAAGCGAAGACGGGGACGGCCCCCTCGGGGTCAACAAAAAGCGACGCCGATACCGAGGAAGAGCATTAGTAGCGACGAAGAGGATGTCTGTTTTATATGCTTTGATGGTGGGAGCCTCGTGCTTTGTGATCGCCGGGGCTGCCCCAAGGCCTATCACCCTGCTTGCGTCAAGAGGGACGAGGCATTCTTTCAATCCAAGGCTAAATGGAATTGTGGATGGCATATATGCAGCAGTTGCCGGAAGGCGTCACATTATATGTGCTATACATGTACTTATTCTTTGTGTAAAGGATGCATTAAGGATGCTGATTATCAATGTGTTAGGGGTAGCAAAGGACTGTGTGGAACTTGTATGAGAACTATAATGCTATTAGAGAAAAGCTTGCCAGGAAGTGAACAACATTTGGTTCAAGTCGATTTTGATGATAAAAGTAGTTGGGAGTATCTTTTTAAAATCTATTGGGTTTGCTTAAAACAAAAGCTGTCTTTAACTCTCGATGATCTAATTGGAGCTAAAAATCCCTGGAACGGAGGCGGGACCATGGATCAGAATGGGAAATCTGTTGGCAACTGTCATGATGCTAATAATGGCAAGAATTGTCCTATCGATAGTGCTGGTGAAGGTGCAATTGCTGCGACTTCTAAGAGGAAAACACTTAAGAGGCAGCAAAAATTTCCCTCCAGGGTAAACTCGACGAACAATAAAACGCCGTTATCTATTGAAGGAAATTTTTGGGCTACAAAGGAGCTTTTGGAGTTTATTGCATATGCAAAAAATGGTGATACGTCTGCGCTTTCACAGTTTGATGTACAGTCTCTAGTGCTGGAATATATTAAAGAAAATAATCTTCGTGATCCTCAACAGAGAAGTCATATTATTTGTGATCGGATGCTGATGAATCTGTTTGGAAAACAACGAGTTGGTCATTTTGAAATGCTCAAGCTTCTTGAATACCATTTTTTCACAAATGAAAGTTCTGTGGCAGTTGACAGAAATAGCAAAGTTCTTGATGTCCTAGTTAGTCACGTGGAAGAAAAGGGAAATGATAGTTACCAATCGATAACTGATGGTGATAGAAAGCGCAAAACACGAAAAAAAGCGGATGATAGGAGGCAACAGATGAATCCAGATGAATATGCAGCTATTGATGTTCACAACATCAACCTGATTTACTTATCGCGTAATTTGATAGAGTCCATAATGGGTGATACTGAAAACTTTCTTGACAAAGTTGTGGATTCATTTGTTCGAATACGAATCTCGGACTATGATCATAAGCCTGACGTGTATAGGCTTGTCCAAGTTGTAGGCACTAGCAAGAGTTCTGAGCCATATGTGATTGGTGAGAAAACAGCTGATGTAATGCTTGATGTATTGAATTTAGACAAGAAAGAGGCAGTATCAATTGAAGGCATTTCAAATCAAGAATTTTCCGAGGATGAATGCAGGCGTCTACATGAGAGTGTAAAATGTGGATTTCTTAAGAGATTTACTGTGGGAGAGATTCAGAAGAAAGCAATGGCACTTCAGGCACTGAAGGTTAATGATCGGCTGGAATCGGAGATATTGCAGCTTAATCATCTCCGTGACCGAGCAAGTGAAAAGGGACTCAAAAAAGAATATCCTTTTCTATTAGAGTGTGTGGAAAAATTACAGCTTCTTAACTCTCCCGAAGAACAACAGCGTCGGATTGTTGAAGTCCCCGAAATACATGCAGATCCAACTTTGGATCCGAGTTTCGTATCTGACGACCTTACAAAAGAATTAAACAAGAGTAAACAAGGCACTTCAAAGACTGGATTTTCCCTCGTTACTTCGTTTGTACGTTTTACCTTCGCAGGTGGCTTTAAGAGAGCATGTAAAACCAGCTCTGGTAGGAAGTGTGGAGGACGGGATCTATTGATTGATTCTAGAAGCAGGATAGAAAATCGTTCAGCTAATACTTCTGGACAACAGATATGTACAGCCAATCATTTGAATAATCCTACCAGTATAGTGATTGGTAATGGGAGTAATCCTATTTCTAATGGGATAGAACACTCCAATGATATTGGAATGGACAAGATTTGGCATTACCAAGACCCTGCTGCAAAAATTCAGGGTCCGTTTTCAATGTCACAGCTGCGAAAATGGAGTTCAAGCGGGCACTTCCCTCCTCATTTCAGAGTATGGAGGATAAGTGAAATGCCCGGTGATTCTGTACTTCTAACCGATGCAATGAAGGGGCAATACGGGAAGAACTCCGTCCAAATACGTGAAGAATTTGGACTTGGACTATGTTCTGACGATGGTGATAATCAGCCAAATGATGAGTGGAGCCGAAATCGACATTCTAATGAGTCGGGTTCTCCCACCGATTGTTCTCTACCTGCAGATGGTGTCAACTCTTGCGAGTTTTGGCAAAAAGTTTTTCAGCAAAGAACTGCAAAAGAAGATAGGGGACATAGCTGTGAGAAACGTTCTGACAGTGACGGCTGTTCTGGGCAGTCTTCCGGTCAAAATTGGAGACCTCTGCCTGCAAATGCTACTCAGGATTCTAGAAGTGGTGGCATTGTCTTGTCTGATTCGATTGAACCACAAAAGCAGAACTTTGATTTCCCTGATCTTCCTAGTCCCACTCCAGCGAAATCGGATGTGGGCCTTACGGGTCAAGCTGTTGAAATCAAACAATCTGCATCTTCAAGGTTCCTTATTCAAGATTCAGTCCCTAGCTGGAGTACAGGTTCGAGTTTGGTCGGTGGAAGGAAACAGCTTCCTGTTTATTCTCCTACACCAGCCAAAGCTTCTGCAAAGGAATGGGACTCCAGTCTTATTACCTCCTCTTCTCTGAAACCAGCTGAATTTATCAGTGATTGTGCTGCTACACCTGCTTCAGTAAACGATCTACTTACACATTCTTCACCATCTCATCCTGCATCGAATGTATCAGATTGGCCAGAAATTATTGAACCTAACGAGTTCAACTCCTTAGGAGACGAATCACTCTCGGATTTGCTTGCTGAAGTCGAAGCTATGGAATCTTTGAGTGAATTGGCTTCGTCAACATCGATAATGAACTGTCGTGATGATTTGACGCAGAGTTGTAAAATCGATTGTTTTAGTTCTGTTGGGGGCTTGAGTCCTACTCCAGAGATGGGAAGAGGCGATGCTTTGAGCTCCACTGGTGATGGACAGGTTCCGGCCCAATCCACAATCACAGACAAACCGCATCTGAGATTGCATATGTTTGATATTGATCTCCAAATGAAGATAGCTGGCCATTCATCAACCACTGTCGAAGTGGACATAAATAAGAAGTACGACAATGTTGCGACCAACCAATGGACAGGCGGTACTGGAATGCAAATTCCGACGCATCTCACTGCAGCTTTAACCATGGAAACTGCAGAAAATGCATGGAGAATTGGATCAGAAGCTACGGATGCTAGTTGGGGAAGTGCAGATATCGGGTGGGGAGGGATCAATGGAGGAAATTCAAATTCCAGTCGGGAAATTCGACCGGGATCAATCCAAGAAATGGGAAGCATGAATTCAGGCACATCAGCTGGATATAATACAACCAACTGGTATGGCCAACTGAAATATGGTATTGATAGACTAACTAGTCCTAGAGATAACGGTAGAGGTAGGTCTTTCTGGGATAAGCAGCCGGTATTTGGAGGCGGGAATCAAAGTGGGCAGTCCCGGCCGCCTCCGAGAGGTCAGGGCCAGCGAGTTTGTAAATTGTACGAGAGCGGGTATTGCAAACGGGGGGCTTCGTGTAGTTACTTGCACCCTTAA 4059 43.83 MEVDEQPALGLRKALIHDEGSTQLGDLRIDNSVPCLELVDVDHTRTSRDMDYSQILGGSDSVPAEGADDRAAAMGAPLAEIEVKVRAQENGLGKRRRGRPPRGQQKATPIPRKSISSDEEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFQSKAKWNCGWHICSSCRKASHYMCYTCTYSLCKGCIKDADYQCVRGSKGLCGTCMRTIMLLEKSLPGSEQHLVQVDFDDKSSWEYLFKIYWVCLKQKLSLTLDDLIGAKNPWNGGGTMDQNGKSVGNCHDANNGKNCPIDSAGEGAIAATSKRKTLKRQQKFPSRVNSTNNKTPLSIEGNFWATKELLEFIAYAKNGDTSALSQFDVQSLVLEYIKENNLRDPQQRSHIICDRMLMNLFGKQRVGHFEMLKLLEYHFFTNESSVAVDRNSKVLDVLVSHVEEKGNDSYQSITDGDRKRKTRKKADDRRQQMNPDEYAAIDVHNINLIYLSRNLIESIMGDTENFLDKVVDSFVRIRISDYDHKPDVYRLVQVVGTSKSSEPYVIGEKTADVMLDVLNLDKKEAVSIEGISNQEFSEDECRRLHESVKCGFLKRFTVGEIQKKAMALQALKVNDRLESEILQLNHLRDRASEKGLKKEYPFLLECVEKLQLLNSPEEQQRRIVEVPEIHADPTLDPSFVSDDLTKELNKSKQGTSKTGFSLVTSFVRFTFAGGFKRACKTSSGRKCGGRDLLIDSRSRIENRSANTSGQQICTANHLNNPTSIVIGNGSNPISNGIEHSNDIGMDKIWHYQDPAAKIQGPFSMSQLRKWSSSGHFPPHFRVWRISEMPGDSVLLTDAMKGQYGKNSVQIREEFGLGLCSDDGDNQPNDEWSRNRHSNESGSPTDCSLPADGVNSCEFWQKVFQQRTAKEDRGHSCEKRSDSDGCSGQSSGQNWRPLPANATQDSRSGGIVLSDSIEPQKQNFDFPDLPSPTPAKSDVGLTGQAVEIKQSASSRFLIQDSVPSWSTGSSLVGGRKQLPVYSPTPAKASAKEWDSSLITSSSLKPAEFISDCAATPASVNDLLTHSSPSHPASNVSDWPEIIEPNEFNSLGDESLSDLLAEVEAMESLSELASSTSIMNCRDDLTQSCKIDCFSSVGGLSPTPEMGRGDALSSTGDGQVPAQSTITDKPHLRLHMFDIDLQMKIAGHSSTTVEVDINKKYDNVATNQWTGGTGMQIPTHLTAALTMETAENAWRIGSEATDASWGSADIGWGGINGGNSNSSREIRPGSIQEMGSMNSGTSAGYNTTNWYGQLKYGIDRLTSPRDNGRGRSFWDKQPVFGGGNQSGQSRPPPRGQGQRVCKLYESGYCKRGASCSYLHP 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2065051 2071276 - BLOR07320 Blo16g00072 71263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00072 1352 SUPERFAMILY CCCH zinc finger 1328 1351 IPR036855 GO:0046872
Blo16g00072 1352 MobiDBLite consensus disorder prediction 306 325 - -
Blo16g00072 1352 Pfam GYF domain 783 821 IPR003169 GO:0005515
Blo16g00072 1352 SUPERFAMILY Plus3-like 475 604 IPR036128 GO:0003677
Blo16g00072 1352 SUPERFAMILY FYVE/PHD zinc finger 109 167 IPR011011 -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 916 943 - -
Blo16g00072 1352 Gene3D - 475 604 IPR036128 GO:0003677
Blo16g00072 1352 MobiDBLite consensus disorder prediction 852 881 - -
Blo16g00072 1352 SMART PHD_3 122 168 IPR001965 -
Blo16g00072 1352 SMART rtf1 474 584 IPR004343 GO:0003677
Blo16g00072 1352 Gene3D SWIB/MDM2 domain 325 421 IPR036885 -
Blo16g00072 1352 Pfam SWIB/MDM2 domain 342 413 IPR003121 -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 1294 1330 - -
Blo16g00072 1352 Pfam Plus-3 domain 479 582 IPR004343 GO:0003677
Blo16g00072 1352 ProSiteProfiles SWIB/MDM2 domain profile. 332 415 IPR003121 -
Blo16g00072 1352 CDD GYF 780 837 IPR003169 GO:0005515
Blo16g00072 1352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 898 1352 - -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 1311 1325 - -
Blo16g00072 1352 Coils Coil 608 628 - -
Blo16g00072 1352 ProSiteProfiles Plus3 domain profile. 474 607 IPR004343 GO:0003677
Blo16g00072 1352 MobiDBLite consensus disorder prediction 442 468 - -
Blo16g00072 1352 SMART swib_2 333 418 IPR019835 -
Blo16g00072 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 210 IPR013083 -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 903 943 - -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 954 973 - -
Blo16g00072 1352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 898 1352 - -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 89 113 - -
Blo16g00072 1352 SMART gyf_5 781 836 IPR003169 GO:0005515
Blo16g00072 1352 CDD PHD5_NSD 122 167 - -
Blo16g00072 1352 ProSiteProfiles Zinc finger PHD-type profile. 120 186 IPR019787 -
Blo16g00072 1352 SUPERFAMILY SWIB/MDM2 domain 330 419 IPR036885 -
Blo16g00072 1352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 36 860 - -
Blo16g00072 1352 MobiDBLite consensus disorder prediction 1134 1156 - -
Blo16g00072 1352 CDD SWIB-MDM2_like 337 413 - -
Blo16g00072 1352 ProSitePatterns Zinc finger PHD-type signature. 123 183 IPR019786 -
Blo16g00072 1352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 36 860 - -
Blo16g00072 1352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1329 1352 IPR000571 GO:0046872
Blo16g00072 1352 Gene3D - 782 839 IPR035445 -
Blo16g00072 1352 ProSiteProfiles Zinc finger C3H1-type profile. 1327 1352 IPR000571 GO:0046872
Blo16g00072 1352 ProSiteProfiles GYF domain profile. 780 834 IPR003169 GO:0005515
Blo16g00072 1352 SUPERFAMILY GYF domain 777 834 IPR035445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00072 - - - vvi:100252322 1127.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00896 Blo16g00072 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00446 Blo-Chr4:3685023 Blo16g00072 Blo-Chr16:2065051 4.56E-46 dispersed
Blo04g00538 Blo-Chr4:4629142 Blo16g00072 Blo-Chr16:2065051 2.87E-08 dispersed
Blo16g00072 Blo-Chr16:2065051 Blo16g00414 Blo-Chr16:16089647 5.66E-08 dispersed
Blo02g00185 Blo-Chr2:1661775 Blo16g00072 Blo-Chr16:2065051 2.14E-40 transposed
Blo16g00072 Blo-Chr16:2065051 Blo04g00896 Blo-Chr4:10335718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13366 PF03126 Plus-3 9.20E-22 No_clan Blo TR