Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00079 ATGGCACCGACGATGACGCTCACTGCTCTTGCCGAGGAGAAGACTCTGCAGCAGAAATTCGTCAGGGACGAAGACGAACGTCCTAAAGTCGCTTACAATGAATTCAGTAATGATATACCCATCATCTCCCTCGACGGAATTGACGAGGTCGATGGTCGGAGAGCCGATATTTGTCAGAAGATAGTGGAGGCCTGTGAGGACTGGGGAGTTTTCCAGGTGATTGATCATGGCGTCGATGTGGAACTTATTTCCGAAATGACTCGTCTCGCGCGAGAGTTCTTCGCTCTTCCTCCCGAGGAGAAGCTCCAGTTCGACATGTCCGGCGGCAAGAAGGGTGGTTTTATCGTCTCCAGCCATCTTCAAGGAGAAGCAGTTCAAGATTGGCGTGAAATTGTGACCTACTTCTCATACCCAATCCGACACCGGGATTACTCGAGATGGCCCGATAAGCCGGAGGGGTGGGTGGAAGTGGCAAAGAAATACAGCGAGGATCTGATGGGTTTGGCCTGCAAGCTCTTGGAGGTGTTATCGGAGGCGATGGGGTTAGAGAAAGAAGCTCTGACCAAAGCTTGCGTCGACATGGACCAGAAAATGGTGGTTAATTTCTACCCGAAATGCCCCCAACCGGACCTAACGCTCGGACTGAAGCGTCATACAGATCCCGGTACAATCACCCTCTTGCTTCAAGATCAGGTGGGCGGGCTTCAGGCCACCCGTGACGACGGCAAATCGTGGATCACCGTTCAACCTGTTGACGGAGCGTTTGTTGTTAATCTCGGCGATCATGGCCATTATCTTAGCAACGGGAGATTTAAGAATGCGGATCATCAAGCGGTGGTGAACTCAAACCACAGCCGATTGTCAATAGCGACGTTCCAGAACCCAGCGCCGGAGGCAACAGTTTACCCACTGAAAGTGAGGGAGGGAGAGAAGCCAGTGCTGGACGAACCCATGACGTTTGCAGAGATGTACCGGAGGAAGATGAGCAAGGACCTTGAGCTTGCCAGGCTGAAGAAGCTTGCCAAAGAACAGGAAGTGAAAGAACAGCTCGATAAAGCTGAGCTTGAATCCAAATCTACAGAAGAAATCTTCGCTTAG 1098 51.55 MAPTMTLTALAEEKTLQQKFVRDEDERPKVAYNEFSNDIPIISLDGIDEVDGRRADICQKIVEACEDWGVFQVIDHGVDVELISEMTRLAREFFALPPEEKLQFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEGWVEVAKKYSEDLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKMVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGKSWITVQPVDGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNHSRLSIATFQNPAPEATVYPLKVREGEKPVLDEPMTFAEMYRRKMSKDLELARLKKLAKEQEVKEQLDKAELESKSTEEIFA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2182628 2184209 + BLOR07327 Blo16g00079 71270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00079 365 MobiDBLite consensus disorder prediction 346 365 - -
Blo16g00079 365 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 149 IPR026992 -
Blo16g00079 365 Coils Coil 343 363 - -
Blo16g00079 365 Pfam 2OG-Fe(II) oxygenase superfamily 196 294 IPR044861 -
Blo16g00079 365 Gene3D - 6 334 IPR027443 -
Blo16g00079 365 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 191 295 IPR005123 -
Blo16g00079 365 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 6 358 - -
Blo16g00079 365 SUPERFAMILY Clavaminate synthase-like 10 330 - -
Blo16g00079 365 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 6 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00079 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - csin:114306386 645.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00885 Blo16g00079 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00020 Blo-Chr3:1283282 Blo16g00079 Blo-Chr16:2182628 0 dispersed
Blo16g00079 Blo-Chr16:2182628 Blo03g00789 Blo-Chr3:32915484 2.63E-67 dispersed
Blo04g00886 Blo-Chr4:10144510 Blo16g00079 Blo-Chr16:2182628 4.15E-118 transposed
Blo16g00079 Blo-Chr16:2182628 Blo04g00885 Blo-Chr4:10143794 7.32E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1112 Blo04g00885 Blo16g00079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00961 . . . . Cma16g01237 . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00079 Blo_Chr16 FPKM 114.812439 125.543655 94.886215 94.817123 93.334702 91.226936 93.518143 111.379608 116.085487 119.660469
Blo16g00079 Blo_Chr18 FPKM 152.335007 171.160339 127.518486 124.821892 133.45697 140.592468 131.722046 138.716187 140.213516 149.695312