Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00082 ATGGGGGAAGAGAGATTGACTGGTGTGGTACAGTGGTTCAATGACTCCAAGGGATTCGGCTTCATCAAGCCCGATGGGGATGGCCCGGATCTGTTTGTTCATCAATCGTCGATCCAATCCGATGGTTACCGACGTCTTGTCGAGGGCGAGCAAGTTGAGTTCCAGATCGCTCCTGGCGATGATGGAAAATCTAAAGCCGTTGATGTTATCTGTATTGATGGATCTTCGTTCCAAGGGAACAGGAGGGATGGTTCGGGTGGTGGAAGAGGTGGTCGTGGCGGTGGGTATGGTTTTGGCGGTGGTTGGAGAGGTGACCGCCGAAACGGCGGGGGTGCTGGCTGCTATAGTTGCGGTGATCCAGGGCATTTGGCTAGGGATTGCGGTCGTGCTAATAACCGTGGTGGAGTAGGCGGTGGGTGCTATTCTTGTGGCGAGGGTGGTCACTTGGCGAGAGATTGCCCTCAAGGCAACGGTGGGAGTGGTGGAGGAGGTGGTGGTGGTGGGGCGGGTTCTTGCTACAATTGTGGTGGCTTTGGACACATGGCGAGGGATTGCAATAAGGGAAGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGCTTGCTTTAAGTGTGGGGAATACGGACACTTGGCTAGGGATTGCGCCGGTGGAAGCAGCAATTTTGGCAGAGGAGCTTCAGGAGCGACGTTCACATTTGTCAACAACTGCGATTTTACAGTATGGCCGGGAACTCTAGGTAGCCCGAAACTAGATAGTACAGGCTTTGAGCTAGAAAAGGGTGGCTCCCGCTCTTTCCAAGCTCCGACAGGCTGGTCCGGCCGATTCTGGGGTCGAACCAGCTGCAACTTCGACGCGTCAGGCCGTGGCGTCTGCGCCACAGGAGACTGCGGATCCGGCGAGGTCGAGTGCAATGGTGCCAGCGCTACTCCTCCGGCGACGCTGGCTGAGTTTACACTCGGCTCCGGCTCGCAGGATTTCTACGACGTTAGCCTTGTTGACGGATATAACCTACCGATGATCGTCGAAGGAACGGGCGGGGCGGGTCCGTGCGAAACCACGGGTTGCGTATCGGACCTCAACCAGCATTGCCCGACGGAATTGAGAGCGGAAGGCGGTGGTGCATGTAGAAGTGCGTGCGAAGCATTTGGGACGGCGGAATACTGTTGCAGCGGCGCTTATAATTCTCCGGCCATTTGTAAACCTTCAATGTACTCGCAGATGTTCAAATCTGCCTGCCCAAAATCATATAGCTACGCTTACGACGACGCCACCAGCACATTCACCTGCACCGGAGCAGATTATACGATCACATTTTGCCCTTCTCCTCCAAGTCTGAAGTCTGCAAGGGATTCATCGGCGACGATGGCCGGAGATGGCACGGAATCAGTGCCTGGTGCGGCAGAGCAGACATCTTCTCCTAACATTGCTTTGCTTGCCAATTTGGCTACCGGTGACTCCAGCCGGACCGACCCTTCAACAGCTTTTCATTCTGCATTGATTTTCGCCGTTTCTCTCAGTCTCTTCTTCTTCCATTCTCAGACTGTGATATTGACTTAG 1560 55.13 MGEERLTGVVQWFNDSKGFGFIKPDGDGPDLFVHQSSIQSDGYRRLVEGEQVEFQIAPGDDGKSKAVDVICIDGSSFQGNRRDGSGGGRGGRGGGYGFGGGWRGDRRNGGGAGCYSCGDPGHLARDCGRANNRGGVGGGCYSCGEGGHLARDCPQGNGGSGGGGGGGGAGSCYNCGGFGHMARDCNKGSGGGGGGGGGGGACFKCGEYGHLARDCAGGSSNFGRGASGATFTFVNNCDFTVWPGTLGSPKLDSTGFELEKGGSRSFQAPTGWSGRFWGRTSCNFDASGRGVCATGDCGSGEVECNGASATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGAGPCETTGCVSDLNQHCPTELRAEGGGACRSACEAFGTAEYCCSGAYNSPAICKPSMYSQMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSPPSLKSARDSSATMAGDGTESVPGAAEQTSSPNIALLANLATGDSSRTDPSTAFHSALIFAVSLSLFFFHSQTVILT 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2209602 2215792 + BLOR07330 Blo16g00082 71273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00082 519 SMART tha2 231 441 IPR001938 -
Blo16g00082 519 PANTHER OS03G0233200 PROTEIN 222 458 IPR001938 -
Blo16g00082 519 SUPERFAMILY Retrovirus zinc finger-like domains 163 217 IPR036875 GO:0003676|GO:0008270
Blo16g00082 519 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Blo16g00082 519 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Blo16g00082 519 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Blo16g00082 519 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Blo16g00082 519 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Blo16g00082 519 Gene3D - 112 162 - -
Blo16g00082 519 Gene3D - 168 224 - -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 202 215 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 222 458 - -
Blo16g00082 519 Pfam Zinc knuckle 201 215 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 171 186 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 139 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Thaumatin family 235 441 IPR001938 -
Blo16g00082 519 ProSiteProfiles Thaumatin family profile. 228 441 IPR001938 -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 172 185 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SUPERFAMILY Osmotin, thaumatin-like protein 229 442 IPR037176 -
Blo16g00082 519 MobiDBLite consensus disorder prediction 450 471 - -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 140 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 288 317 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 275 286 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 431 440 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 326 342 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 254 263 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 230 242 IPR001938 -
Blo16g00082 519 SMART csp_8 7 72 IPR011129 GO:0003676
Blo16g00082 519 ProSitePatterns Thaumatin family signature. 288 304 IPR017949 -
Blo16g00082 519 SUPERFAMILY Retrovirus zinc finger-like domains 106 156 IPR036875 GO:0003676|GO:0008270
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Gene3D Thaumatin 229 441 IPR037176 -
Blo16g00082 519 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Blo16g00082 519 CDD CSP_CDS 7 69 IPR002059 GO:0003676
Blo16g00082 519 Gene3D - 2 69 IPR012340 -
Blo16g00082 519 CDD TLP-PA 230 440 - -
Blo16g00082 519 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676
Blo16g00082 519 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00082 - - - jre:108997718 452.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo05g00709 Blo16g00082 CCT
Blo05g00709 Blo16g00082 ECH
Blo04g00882 Blo16g00082 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00561 Blo-Chr4:4837151 Blo16g00082 Blo-Chr16:2209602 2.01E-30 dispersed
Blo04g00883 Blo-Chr4:10115411 Blo16g00082 Blo-Chr16:2209602 1.33E-63 dispersed
Blo12g00882 Blo-Chr12:27019113 Blo16g00082 Blo-Chr16:2209602 4.90E-92 dispersed
Blo13g00516 Blo-Chr13:26688647 Blo16g00082 Blo-Chr16:2209602 1.65E-32 dispersed
Blo15g00372 Blo-Chr15:5196858 Blo16g00082 Blo-Chr16:2209602 6.88E-121 dispersed
Blo16g00082 Blo-Chr16:2209602 Blo17g00815 Blo-Chr17:26326885 2.58E-76 dispersed
Blo17g00184 Blo-Chr17:1870138 Blo16g00082 Blo-Chr16:2209602 1.03E-21 dispersed
Blo08g00069 Blo-Chr8:674114 Blo16g00082 Blo-Chr16:2209602 2.35E-11 transposed
Blo01g01603 Blo-Chr1:55891279 Blo16g00082 Blo-Chr16:2209602 3.43E-95 wgd
Blo16g00082 Blo-Chr16:2209602 Blo18g00776 Blo-Chr18:22182084 3.05E-90 wgd
Blo16g00082 Blo-Chr16:2209602 Blo04g00882 Blo-Chr4:10098299 1.73E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13368 PF00314 Thaumatin 1.10E-80 CL0293 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00082 Blo_Chr16 FPKM 22.271425 26.121525 50.53595 50.483032 22.661768 20.614206 21.419596 27.557775 23.02109 25.605597