Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00083 ATGGAAGACGAAGGACGATCATTGGCCGACACTCCTACCTGGGCTGTGGCGACAGTCGTCACTATCATCGTCGCTTTTGGGTTTTTCTTTCAGGGTTCTCTGAAACGATTCGGAAAGTGGCTAGATGAGACCAAAAGGAAATCTCTACTTGCTGCACTGGAGAAGATTAAGCAAGCAGAGCTGATGCTTTTTGGACTGTTGTCACTGATAATGGGTCACTGGATTATCTTCGTGGCGAAGATTTGTGTTAAATCATCAGTTTTAAGCACTCGATTTTATCCTTGTGCATTGAAAGATGATAATCTATCTGCAAAGCACATTCATTCTTTGACTGAGTACTCGAATAACTCGTCTCCGGCGGGCAAGATCGCAGAAAGAAGACATGAATACTGTCCCGAGGGTCTTGAATCATTTGCATCCTACGAAAGCCTCGAGCAGCTACACAGATTCATATTTGTTCTCGGTGTAACTCATGTTTCTTACAGCTTTGTTGCCATCGCCCTCGCTATGATTAAGATTTACAGCTGGAGAAGATGGGAAAGTGAAGCCAATTTGTTGGCCATTCAAAGCTTACAAGACACTCCGGAGGTTGTAGTGGACAGCACGAAAATGAGACGATTGTCGACGTTCATTTTTCACCAGGCGTCTCATCCATGGAGTCAGCACAAGGTTCTCGTTTGGCTGCATTATAGCGATTTGCAGCTTTGCTTCAGCAGCCAGTTTTGGAGCTCCATAAATCGAGCTGATTACATGGCTTTGCGCTTAGGCTTCATTACAACACATCAACTCCCTCTGCTATATGACTTCCATAATTACATGCTTCGAAGCATGGAGGAAGAATTTCGGGATATTGTTGGAATAAGATGTTCGCATAAAACTTTGGTGTCGTCTTTGGTTCTGCTAATGGGAACGAAATTACGCCGCGTGGTTGTAAAATTGGCGGTGGAAATCATGGATGGTTGTCCGACCGGTGAGCATCTTCGCTTTAATCTCAGGGATGAGCTGTTTTGGTTTGGCAAGCCGAAGCTTCTTTTATGGTTGATCCAACTTATATCCTTTCAGAATGCATTTGAGATGGCTACCTTCATTTGGTCGCTGTGGGAAATTAAGCAACCTTCCTGTTTCATGGACGACCGAACTTACCTCGTCTTCCGCTTGGTGTTTGGGATCATCTCTCAAATCTGGTGTAGCTTTGTGACTTTCCCACTCTACGTCATCGTTACTCAGATGGGTTCGAGGTTCAAGAAATCTATAGTGTCGGAAAATGTAAGAAAATCACTCCATGGATGGAAGCGACGAGTGAAGTCCAAGAAAAGAAGAACTTCTTCCACAATTCCTCTTCTGGGAACATCCGCAGTTTCAGTTTCCAGTTCTGAAGGGGGCAGCGTTCTTCAAATCGAAAACTTCCCGTCAAACAGCGCTGAAGAGCAGACCTTAAGTACCCACGTTTCATCTTTCTCAAATCAACAACCACTGAATGACGACGCCTCCCAGAGTAATTCGAGCAGTCCTCATGATTATTCCGACAGCGAAGTAGAAGAGCAGTCGACGCGGACGACGATGGTTTTGTACTCGTGTCGTAATTCGGTTTCTGTGTCGGGACAGGCAACGATTATCTGCATTGATAATTCGGAATGGATGCGAAACGGTGATTACGCTCCTTCCAGATTTCAAGCTCAAGCCGACGCTGTTAATCTAATTTGTGGAGCGAAGACACAGTCTAATCCGGAGAATACGGTTGGATTGCTGACAATGGCTGGCAAAGGTGTTCGCGTTTTGGTAACTCCAACTAGTGATCTTGGAAAGATTCTAGCATGCATGCATGGTTTAGAGACTGGAGGCGAGATGAACCTGGCTGCAGGAATCCAGGTTGCCCAGTTGGCTCTTAAGCATCGACAAAATAAAAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTTAAACATGAAAAGAAGTTGCTGGAGACGATAGGAATGAAGCTAAAGAAGAACAGTGTCGCACTTGATGTTGTTGATTTTGGTGAAGAAGAAGATGGGAAGCCAGAGAAGCTTGAAGCTCTTGTTGGGGCAGTCAACAATAATGACACAAGTCACATTGTGCATGTTCCATCTGGTCCAAATGCTCTGTGTGATGTGCTTATTAGTACTCCTATCTTCACCGCAGATGGAGAAGGAGGAAGTGGATTTGTAGCAGCTGCGGCGGCAGCTGCAGCAGCTGGTGGTGTATCTGGTTTTGATTTTGGTGTAGATCCAAATTTAGATCCCGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAAAGGGCCAGGCAAGAAGCAGCTGCTAAAAAGGCTGCGGAGGATGCCGCAAAGCAGGACAAAGGAGGTGAACCGTCGTTTGTCTCACAAGATGCATCTATGACTGAACGTTCTGGGGCTGCAACTTCTGATGTTGACAATAAAAGCGATTTAATGGATGATGAGAATGCTTTGCTACAGCAGGCCCTTGCGATGTCAATGGATGATCCTGCTTCTAGCCATGATATTCAAGACACAGATATGTCTGATGTAGTTGCAGATGATCCAGAGTTGGCTCTTGCTCTTCAGTTATCTGTGCAGGATGGTGTAAAAGATTCAGATAGCCAGACAGATATGAGTAAGGTGTTGGCAGACCAGTCCTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGATCCAAATGATCCTTCAGTTAAAGATTTGATTGCTTCCATGCAAAGCCAGTCAGAAGTGATTATTTCTAGAGAAGAAGTAATGGTCGTTCCCATGTTGTTTCTGGAGGACTTAAGATGA 2823 45.06 MEDEGRSLADTPTWAVATVVTIIVAFGFFFQGSLKRFGKWLDETKRKSLLAALEKIKQAELMLFGLLSLIMGHWIIFVAKICVKSSVLSTRFYPCALKDDNLSAKHIHSLTEYSNNSSPAGKIAERRHEYCPEGLESFASYESLEQLHRFIFVLGVTHVSYSFVAIALAMIKIYSWRRWESEANLLAIQSLQDTPEVVVDSTKMRRLSTFIFHQASHPWSQHKVLVWLHYSDLQLCFSSQFWSSINRADYMALRLGFITTHQLPLLYDFHNYMLRSMEEEFRDIVGIRCSHKTLVSSLVLLMGTKLRRVVVKLAVEIMDGCPTGEHLRFNLRDELFWFGKPKLLLWLIQLISFQNAFEMATFIWSLWEIKQPSCFMDDRTYLVFRLVFGIISQIWCSFVTFPLYVIVTQMGSRFKKSIVSENVRKSLHGWKRRVKSKKRRTSSTIPLLGTSAVSVSSSEGGSVLQIENFPSNSAEEQTLSTHVSSFSNQQPLNDDASQSNSSSPHDYSDSEVEEQSTRTTMVLYSCRNSVSVSGQATIICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGLLTMAGKGVRVLVTPTSDLGKILACMHGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKLLETIGMKLKKNSVALDVVDFGEEEDGKPEKLEALVGAVNNNDTSHIVHVPSGPNALCDVLISTPIFTADGEGGSGFVAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQDKGGEPSFVSQDASMTERSGAATSDVDNKSDLMDDENALLQQALAMSMDDPASSHDIQDTDMSDVVADDPELALALQLSVQDGVKDSDSQTDMSKVLADQSFVSSILASLPGVDPNDPSVKDLIASMQSQSEVIISREEVMVVPMLFLEDLR 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2219208 2230406 + BLOR07331 Blo16g00083 71274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00083 940 Pfam von Willebrand factor type A domain 537 646 IPR002035 -
Blo16g00083 940 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 754 773 IPR003903 -
Blo16g00083 940 PANTHER MLO-LIKE PROTEIN 3 502 - -
Blo16g00083 940 SMART uim 855 874 IPR003903 -
Blo16g00083 940 SMART uim 823 842 IPR003903 -
Blo16g00083 940 SMART uim 754 773 IPR003903 -
Blo16g00083 940 Coils Coil 764 784 - -
Blo16g00083 940 MobiDBLite consensus disorder prediction 774 819 - -
Blo16g00083 940 CDD VWA_26S_proteasome_subunit 535 719 - -
Blo16g00083 940 ProSiteProfiles VWFA domain profile. 536 720 IPR002035 -
Blo16g00083 940 Gene3D - 752 841 - -
Blo16g00083 940 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 823 842 IPR003903 -
Blo16g00083 940 MobiDBLite consensus disorder prediction 774 790 - -
Blo16g00083 940 MobiDBLite consensus disorder prediction 480 506 - -
Blo16g00083 940 PANTHER MLO-LIKE PROTEIN 1 3 502 IPR004326 GO:0006952|GO:0016021
Blo16g00083 940 MobiDBLite consensus disorder prediction 795 814 - -
Blo16g00083 940 Pfam Ubiquitin interaction motif 823 838 IPR003903 -
Blo16g00083 940 Pfam Ubiquitin interaction motif 856 870 IPR003903 -
Blo16g00083 940 Pfam Ubiquitin interaction motif 756 769 IPR003903 -
Blo16g00083 940 SUPERFAMILY vWA-like 536 705 IPR036465 -
Blo16g00083 940 MobiDBLite consensus disorder prediction 480 514 - -
Blo16g00083 940 SMART VWA_4 534 706 IPR002035 -
Blo16g00083 940 Gene3D von Willebrand factor, type A domain 535 717 IPR036465 -
Blo16g00083 940 Pfam Mlo family 298 458 IPR004326 GO:0006952|GO:0016021
Blo16g00083 940 Pfam Mlo family 6 289 IPR004326 GO:0006952|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00083 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 K08472 jre:108997698 613.609
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00881 Blo16g00083 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00083 Blo-Chr16:2219208 Blo03g01542 Blo-Chr3:42937782 6.33E-84 dispersed
Blo16g00083 Blo-Chr16:2219208 Blo04g00881 Blo-Chr4:10026084 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1131 Blo04g00881 Blo16g00083 . . Bpe15g00475 Bpe13g00411 . Bma15g00911 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0818 . . . . . . . . Bda11g01831 . . . Bma03g00957 . . . . Cma16g01241 . . . . . . . . . . . . . . . . . . . Lsi07g01097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006348 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00083 Blo_Chr16 FPKM 8.961328 10.929507 14.767062 14.287429 6.523872 5.389437 7.268007 6.386662 8.334126 13.002164