Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00086 ATGGCTTCTCTTGACCCCCATCACCGAAACTCTCTCTATCCTCAAGTTATTCAATCAAATCCCGACGTCCCACCATCATGCGTCTACCGTTCGGATCTCAATCCGCCGTCTTCTTATTCTTCTAATCTTTATCCCACTATCGACATGAGAGATCTCACGGAGAATCTATTCCCGGAGAGCGGAGATTATCGTAACGCTTATCAAGTTCCTCCTTCGGCTCCTCCTGTAGCGGTGGAAGAGGTTCTTGTTAAAATCCATGGGGCTATTCTTAATATCATCGACAGGAATTACAGTGTTGAGCTTGCTTGTGGCGATTTTTCCATTGTCCGTCTACGGCAGGGCGAAAATGTTGTCGCGATGCTCGCTCGCGTTGCTGATGAGATCCAATGGCCTTTGATAAAAGATGAGGTGGTAGTAAAACTCGATGGATCGCATTACTTCTTCTCTCTTCGCCCTCCCAAAAAAGAAGATTCCGATTCCGAATCGAGCGACGAGGAGGGAAGAAGGAACGATCATGGCTCCGAAAGTTTACTGAACTACGGGCTGACAATCCCATCAAAAGGGAAAGAAAAATTATTGAAGGAACTGGACGGAATTTTGGACCAATATAGTAGCTTCACGGTAACAGAAGGTGTCGTACAAGGCAAAAATGAGGAGATGTCTGCGGCGGATCTGAAATCAGGGAAGAAGAAGAAACTGATGGAGGGTAAGTGTGCGGCTTACTGGACCACATTGGCTCCTAATGTAGAGGATTACAGTGGGACTGCCGCAAAGTTGATCGCCGCTGGTTCAGGTCACGTGATCAAGGGGATTTTGTGGAGTGGAGATGTGACTGCAGAGAGATTGAAATGGGGGAATGAGGTGATGAAGAAGAAGATGAGCCATAGCTCTGAAGTAGAAATTGACCCTAAAACTCTGAAGAGAATTAAAAGGATTAAGCTGGTGACGAAAATTACGGAGAAAGCAGCAAATGGAGTACTTTCGGGAGTTATCAAAGTTTCAGGATATGTAACAAGCTCAGTGGCGAACTCAAAAGTAGGCAAGAAATTTTTCAGCCTACTCCCCGGTGAAGTTCTGCTAGCTTCCTTAGATGGATTTAGTAGAGTTTGTGATGCTGTCGAAGTGGCCGGGAAAAATGTCATGTCTACATCTGCTACGGTAACCACAGATTTCGTGTCCCACAGATACGGGGAAGAAGCCAGCCGTGCAACAAATGAAGGTATGGGCGCTGCAGGCCATGCTATAGGGACTGCATGGGCTGCTTTCAAGCTCCGAAAGGCTCTCAATCCGAAAAGTGTCCTCAAAACTTCTAGCCTTGCCAAATCTGCTGTCAAAGCTGGGGTGGCTGACCTGAAAGCCAAGAAATCCAAGTAA 1374 46.58 MASLDPHHRNSLYPQVIQSNPDVPPSCVYRSDLNPPSSYSSNLYPTIDMRDLTENLFPESGDYRNAYQVPPSAPPVAVEEVLVKIHGAILNIIDRNYSVELACGDFSIVRLRQGENVVAMLARVADEIQWPLIKDEVVVKLDGSHYFFSLRPPKKEDSDSESSDEEGRRNDHGSESLLNYGLTIPSKGKEKLLKELDGILDQYSSFTVTEGVVQGKNEEMSAADLKSGKKKKLMEGKCAAYWTTLAPNVEDYSGTAAKLIAAGSGHVIKGILWSGDVTAERLKWGNEVMKKKMSHSSEVEIDPKTLKRIKRIKLVTKITEKAANGVLSGVIKVSGYVTSSVANSKVGKKFFSLLPGEVLLASLDGFSRVCDAVEVAGKNVMSTSATVTTDFVSHRYGEEASRATNEGMGAAGHAIGTAWAAFKLRKALNPKSVLKTSSLAKSAVKAGVADLKAKKSK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2240316 2242247 + BLOR07334 Blo16g00086 71277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00086 457 MobiDBLite consensus disorder prediction 152 180 - -
Blo16g00086 457 Pfam Senescence domain 259 443 IPR009686 -
Blo16g00086 457 MobiDBLite consensus disorder prediction 152 173 - -
Blo16g00086 457 PANTHER SPARTIN 1 457 IPR045036 -
Blo16g00086 457 PANTHER SENESCENCE/DEHYDRATION-ASSOCIATED-LIKE PROTEIN 1 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00086 K19366 SPG20; spartin - zju:107424438 578.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00879 Blo16g00086 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00879 Blo-Chr4:9876623 Blo16g00086 Blo-Chr16:2240316 0 dispersed
Blo14g00517 Blo-Chr14:7275740 Blo16g00086 Blo-Chr16:2240316 1.99E-55 dispersed
Blo16g00084 Blo-Chr16:2232283 Blo16g00086 Blo-Chr16:2240316 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1137 Blo04g00879 Blo16g00086 . . . Bpe13g00409 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0857 Cone12ag0820 . . . . . . . . Bda11g01830 . . . . Bma06g00091 Sed02g0073 . . Cma16g01242 . . . . . Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . . . . . . . . Lsi07g01095 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00086 Blo_Chr16 FPKM 21.954487 21.97294 15.235436 15.835508 53.689041 60.960464 54.296936 36.528355 34.239834 34.875267