Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00089 ATGAGCGCGTCGAGGTTCATAAAATGCGTCACGGTTGGGGATGGAGCTGTGGGCAAAACTTGTCTTCTTATCTCCTACACTAGTAACACCTTCCCTACGGATTATGTGCCAACTGTTTTTGACAATTTTAGCGCGAATGTTGTTGTCAATGGAAGTACTGTCAACCTGGGGTTGTGGGATACTGCTGGACAGGAAGATTATAATAGGTTAAGGCCGCTGAGTTATCGTGGGGCAGATGTTTTCATTTTGGCATTTTCTCTAATTAGCAAAGCCAGCTACGAAAATGTTTCCAAAAAGTGGATTCCAGAGTTGAAGCACTATGCACCTGGTGTTCCTATAGTTCTTGTTGGAACAAAGCTTGATCTTCGTGATGATAAGCAGTTCTTCATAGATCATCCTGGTGCCGTGCCAATTTCAACAGCTCAGGGCGAGGAACTAAGGAAGCTGATTGGTGCACCTGCTTACATAGAATGCAGTTCAAAAACGCAGCTGAATGTGAAGGCAGTTTTTGATGCAGCAATTAGGGTTGTACTTCAACCACCAAAGCAGAAGAAAAAGAAGAGCAAAGCTCAGAAAGCCTGCTCCATATTGTGA 594 43.94 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQLNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2258854 2261101 + BLOR07337 Blo16g00089 71280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00089 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Blo16g00089 197 CDD Rop_like 6 178 - -
Blo16g00089 197 SMART ras_sub_4 4 180 - -
Blo16g00089 197 SMART ran_sub_2 12 197 - -
Blo16g00089 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Blo16g00089 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Blo16g00089 197 SMART rab_sub_5 7 180 - -
Blo16g00089 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Blo16g00089 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Blo16g00089 197 Gene3D - 5 192 IPR027417 -
Blo16g00089 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Blo16g00089 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Blo16g00089 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Blo16g00089 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Blo16g00089 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Blo16g00089 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Blo16g00089 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Blo16g00089 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Blo16g00089 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 1 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00979 Blo16g00089 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00298 Blo-Chr8:4170678 Blo16g00089 Blo-Chr16:2258854 6.17E-103 dispersed
Blo14g00503 Blo-Chr14:6786489 Blo16g00089 Blo-Chr16:2258854 6.66E-104 dispersed
Blo02g00678 Blo-Chr2:18714104 Blo16g00089 Blo-Chr16:2258854 1.03E-123 transposed
Blo15g00474 Blo-Chr15:7686524 Blo16g00089 Blo-Chr16:2258854 1.61E-103 transposed
Blo01g01606 Blo-Chr1:55941341 Blo16g00089 Blo-Chr16:2258854 3.55E-87 wgd
Blo16g00089 Blo-Chr16:2258854 Blo18g00771 Blo-Chr18:21755109 4.73E-96 wgd
Blo16g00089 Blo-Chr16:2258854 Blo04g00876 Blo-Chr4:9826122 6.85E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00089 K04392 - tcc:18610734 373.244