Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00090 ATGGTTTCCAACGGGATCGAAGACGAGGAAAAATGGCTGGCAGCTGGGATTGCTGGCCTCCAGCAGAACGCGTTCTACATGCATCGTGCTCTGGATTCCAACAATCTGAAAGATGCCTTGAAATATTCGGCACAGATGCTTTCCGAGCTGCGTACTTCGAAACTTTCTCCGCATAAATACTACGAATTATATATGCGAGCATTTGATGAATTGAGGAAGTTGGAAATGTTCTTTAAGGAAGAGGCTAGACGAGGATGTTCAATTATCGATCTGTATGAACTTGTACAGCATGCGGGTAACATATTACCAAGATTGTACCTTTTATGTACTGTAGGATCAGTGTATATTAAATCCAAGGAAGCTCCTGCAAAGGACGTTCTTAAAGATCTGGTTGAAATGTGCCGAGGTGTTCAGCATCCTTTACGGGGCCTCTTCTTGAGGAGTTACCTTTCTCAAGTCAGTAGAGACAAGTTACCTGATATTGGTTCTGAGTATGAAGGGGATGCTGAAACGGTAATGGATGCAGTGGAGTTTGTGCTGCAGAATTTTACAGAAATGAACAAACTTTGGGTGCGGATGCAGCATCAGGTTGGTTGGAATGTCTATGTTTTCTGTTATAGTGCTTGTGAATCATTCATAGTCTTAGCTGATCCTGTGTTGAGGCTTGCTGTCGGGCTTTCTGGTCTGCAGGGACCTGCCCGGGATAAGGAGAAACGGGAGAAGGAAAGGAGTGAGCTACGCGATCTCGTAGGAAAGAACTTGCATGTCCTCAGTCAGATTGAAGGTATTGACCTTGACTTGTACAAAGAAACAGTCCTTCCCAGGGTTTTGGAGCAGGTTGTTAACTGTAAAGATGACATAGCTCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTATCACTTGCAAACTCTTGATATATTGTTGGGCGCTTGCCCCCAACTTCAGCCATCTGTTGATATTAAGACAGTGCTATCTCAATTAATGGAAAGGCTTTCAAACTACGCTGCATCCAGTACTGATGTGTTGCCGGAGTTTTTGCAAGTAGAAGCATTTTCGAAATTGAGTAGTGCCATTGGGAAGGTTATAGAAGCACAGGTTGAGATGCCGACAGATGGAGTTGTTTCCCTATATTCTGCTCTTCTTACATTTACGCTTCATGTACATCCTGATCGGCTTGATTATGCAGACTTAGTTATGGGCGCATGTGTTAAAAAGCTATCTGGAAAAGGAAAAATTGAAGACAGCAACGCAAGAAAACAAATTGTTGCCCTCTTAAGTGCTCCATTAAATAAATATAATGACGTAGTCACTGTCTTGAAGCTCTCAAACTATCCACGTGTTATGGAGTACCTTGATAATGGAACAAATAAAGTCATGGCATCTGTTATTATACAAAGCATTTTGAAAAACAAAACTCGAATAACCACGGCCGACAAAGTGGACGCTTTGTTTGAACTAGTCAAAGGGCTGATCAAAGATTCAGATGGGACTGTTCCTAATGAGCTCGATGAAGATGATTTCCAGGAGGAACAAAATTCTGTTGCACGTCTATTTCAGATGCTCTATAATGATGATCCAGAAGAGATGTTTAAGGTCATATGTACTTTAAAGAATCATATTTTGTCTGGTGGATTAAAGCGCCTACCCTTTACAGTGCCTGCCCTTGTTTTTTCTTCTCTGAAGGTGGTGGAAGATAGAAATGAATTACTTAAAACTGGTGGGCAAAGAAGAAGTGGTTGGATGGAGAAGCTGAACCCAGAAAAAATCGGTAATGGAGAGGACGCAATGAAAGATGAATCAGCCGAAGATGGAGAAGAAGAGGAGTGTTGCGAGCAAACTGTAGTGCTCGAAGAACTGGTGACAAAAAAAATCGGGGAAAGTGGAAACGGGATTTTTGTGACTGCAGGAAAGGAGCCGGCGCTTACAGGGGAGAAACTGGTGACTGCAAGAGAGGAACCGGCGATGATGGAAGTGAAGGAATCGGCAACTGCGACGGTGGAAATGGACGACGAGCTGGAAACTGTAATTGCAGAGAGTGAAGGAAAAAAGAAATTGTTTCCAGAAGCACAATCCACCATCTTTCCTGAAGCCCTAAGAGATATTGGGCCAAGCCCAATGCGGGCTCATTTAGAGAAAAAATTAGGTTCTAACCTTTTAATCAAGCTGGCTAAGCAATTACAAGGACAAGAGGAAAATCCCTTTGGAAATGCCGCAGCAACAACACCAAAGAAAATTTTCCAGCTTTTGACGCAGACTATTGAGGTTCTTTCAAGTGTTCCAGCTTCTGAATTGGCAATGCGGTTATATTTGCAATGTGCTGAGGTTGCAAATGATTGTGATTTGGAGCCTGTGGCTTATGAATTTTTCACCCAGGCATATATTCTGTATGAGGAAGAAATTTCAGATTCGAAAGCACAAGTAACAGCAATTCATTTGATAATAGGGACTCTTCAGCGGATGCACGTCTTTGGTGTTGAAAACAGAGACACTTTAACTCACAAGGCCACTGGGTACTCCGCAAAGTTGTTAAAGAAGCCTGATCAATGCAGAGCAATTTATGCATGTTCACATCTCTTCTGGCTTGATGATCAGGATGATATGAAGGATGGAGAAAGAGTTCTGCTTTGCCTGAAGCGTGCATTGAGAATTGCCAATGCTGCGAAACAAATGAGCAATGCTACACGAGGAAGCACAGGATCAGTGGGTCTCTTCATTGAGATACTTAACAAATACTTGTATTTCTTTGAGAAGGGAAATCCGCAAATCACAGCAGCTACAATTCAGGGGCTGATTGAATTGATTACAACTGAAATGCAAAGTGATTCAACTGAAGCAGACGCTACTGCTGATGCTTTTTTTGCCAGCACACTACGCTACATTCAATTCCAGAAGCAGAAAGATGGGGCAGTTGGGGAGAAGTACGAGGTGATTAAGGTTTGA 2955 42.4 MVSNGIEDEEKWLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGVQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDAETVMDAVEFVLQNFTEMNKLWVRMQHQVGWNVYVFCYSACESFIVLADPVLRLAVGLSGLQGPARDKEKREKERSELRDLVGKNLHVLSQIEGIDLDLYKETVLPRVLEQVVNCKDDIAQFYLMDCIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNYAASSTDVLPEFLQVEAFSKLSSAIGKVIEAQVEMPTDGVVSLYSALLTFTLHVHPDRLDYADLVMGACVKKLSGKGKIEDSNARKQIVALLSAPLNKYNDVVTVLKLSNYPRVMEYLDNGTNKVMASVIIQSILKNKTRITTADKVDALFELVKGLIKDSDGTVPNELDEDDFQEEQNSVARLFQMLYNDDPEEMFKVICTLKNHILSGGLKRLPFTVPALVFSSLKVVEDRNELLKTGGQRRSGWMEKLNPEKIGNGEDAMKDESAEDGEEEECCEQTVVLEELVTKKIGESGNGIFVTAGKEPALTGEKLVTAREEPAMMEVKESATATVEMDDELETVIAESEGKKKLFPEAQSTIFPEALRDIGPSPMRAHLEKKLGSNLLIKLAKQLQGQEENPFGNAAATTPKKIFQLLTQTIEVLSSVPASELAMRLYLQCAEVANDCDLEPVAYEFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAIYACSHLFWLDDQDDMKDGERVLLCLKRALRIANAAKQMSNATRGSTGSVGLFIEILNKYLYFFEKGNPQITAATIQGLIELITTEMQSDSTEADATADAFFASTLRYIQFQKQKDGAVGEKYEVIKV 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2262959 2274019 - BLOR07338 Blo16g00090 71281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00090 984 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 725 984 - -
Blo16g00090 984 PANTHER VACUOLAR SORTING PROTEIN 35 725 984 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo16g00090 984 PANTHER VACUOLAR SORTING PROTEIN 35 229 570 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo16g00090 984 Gene3D - 500 591 IPR042491 -
Blo16g00090 984 Gene3D - 714 969 IPR042491 -
Blo16g00090 984 PANTHER VACUOLAR SORTING PROTEIN 35 2 196 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo16g00090 984 PIRSF Retromer_Vps35 2 984 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo16g00090 984 Pfam Vacuolar protein sorting-associated protein 35 12 941 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo16g00090 984 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 196 - -
Blo16g00090 984 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 229 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00090 K18468 VPS35; vacuolar protein sorting-associated protein 35 - csv:101218480 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01606 Blo-Chr1:55941341 Blo16g00090 Blo-Chr16:2262959 1.12E-174 dispersed
Blo16g00090 Blo-Chr16:2262959 Blo10g00261 Blo-Chr10:3680213 1.58E-19 dispersed
Blo01g01607 Blo-Chr1:55957021 Blo16g00090 Blo-Chr16:2262959 2.97E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1157 . Blo16g00090 . . Bpe15g00484 Bpe13g00406 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0827 . . . . . . . . Bda11g01827 . . . Bma03g01040 Bma06g00089 . . . Cma16g01247 . . . . . . . . . . . . . . . . . . . Lsi07g01089 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00090 Blo_Chr16 FPKM 13.090774 12.873837 3.108233 2.6699 17.497198 15.147003 17.371437 0.0 0.0 0.0