Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00092 ATGGTGAGGAAATCGGTGGAGCATATGAAGGGAGTTTCAGGGGTGCAAGTGGAGCCGAAGCAGAAGAAGCTGACGGTCATTGGCTACGTCGACCCAGACAAGGTCTTGCATCGCGTGAGATATCGGACGGGGAAGAAGGCCGAGTTTTGGCCGTACGTTCCCTTCGACATCGTGGCTCATCCGTACGCCCAGGGGGCTTACGATCGGAAAGCTCCGCCGGGATACGTGAAGAACACGGCGGGGAATCCGGAGGCGTCGGCGCTGGCTCGGGCGACCTCGTTCGAGGTGAAATACTCGACGGCTTTCAGCGATGATAACCCAAACGCTTGCGTCGTAATGTGA 342 57.89 MVRKSVEHMKGVSGVQVEPKQKKLTVIGYVDPDKVLHRVRYRTGKKAEFWPYVPFDIVAHPYAQGAYDRKAPPGYVKNTAGNPEASALARATSFEVKYSTAFSDDNPNACVVM 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2281027 2281368 - BLOR07340 Blo16g00092 71283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00092 113 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 113 IPR045181 GO:0046872
Blo16g00092 113 SUPERFAMILY HMA, heavy metal-associated domain 2 51 IPR036163 GO:0046872
Blo16g00092 113 CDD HMA 2 48 IPR006121 GO:0046872
Blo16g00092 113 Gene3D - 1 48 - -
Blo16g00092 113 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 27 2 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00092 - - - pvy:116135213 191.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00381 Blo-Chr15:5309577 Blo16g00092 Blo-Chr16:2281027 3.77E-49 dispersed
Blo16g00092 Blo-Chr16:2281027 Blo11g00737 Blo-Chr11:9909086 1.90E-29 dispersed
Blo16g00092 Blo-Chr16:2281027 Blo04g00568 Blo-Chr4:4897653 1.58E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1161 . Blo16g00092 . . . . . . . . . . . . Sed14g1206 . . Bhi03g00834 Tan03g2103 Cmetu11g1017 . Hepe04g1611 . . . . . . . . . . Cone12ag0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013554 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00092 Blo_Chr16 FPKM 24.281519 26.241121 22.968861 26.348202 20.591108 18.710447 20.019712 39.312584 36.086834 35.541092