Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00100 ATGTCTTTTGAGAAAGACGAGAAGATCCAGCTCATGATGAGCCCGCTGCCAGAGACCAAAATCTGGATTTTGTTGAAGATTGAGCCTTTAAGACAAGATAGTTGGTTGAATCGAGTTTTATTGTTAAGTTCCTATGGTGGAGCAGTCATTTCCGCTCTGAACATTCTGTTGGCTCCGTCCACATTGGCGTCGATTTTACAAGAATTGGAGCCCAAAGTTATTTTCGTGGACTACCAATTTCTTGATGTTGTCCTTGAGACACTAAACACACTCTCCATTCAGAACACTGAAAAGCAACCCCGCCTGGTTCTTAAAATGGAGATGAATCAAACATCGCTTTCGACAATCGACAAAACATTGCCAAATATCCTCAATTATGATGAGCTTCTTTCAATGGGAGATCCAGGTTTTACGCCTTTGCCAAACAAGGAGTACAGTCCAATTTCGGTGAATTACACTTCTGGGTCGACTGGGAAACACAAAGGAGTAGTTTACAGCCACAGAGCTACCTATCTGAATTCGTTAGCGACCATCAACCGAAGCAATATGCAGACAGTGCCTGTGTTTTTGTGGACTGTGGACATGTTTAGCTGCAATGGGTGGTGCTTCGTTTGGGCAATGGCTGCTATTGGAGGGACAAATATCTGCCTCAGAAAAGTGTCAGCAGAAGTCATATTTGAAGCTATACTTCTTCACAAGGTCACTCTCTTCTGTGGAGCACCCGCAATTTTGAAACTGATAGCAGAGGCACCTGCTAGCATTCGAAGGCCACTTCCACGGAGGGTTAATCTTATAATTGCAGGCGCATTGCCAGTTCCAGATGTCCTAAATAAGGTGAGGATTCGACGTCAGCCATGGTTACGGCATGACTGA 873 44.33 MSFEKDEKIQLMMSPLPETKIWILLKIEPLRQDSWLNRVLLLSSYGGAVISALNILLAPSTLASILQELEPKVIFVDYQFLDVVLETLNTLSIQNTEKQPRLVLKMEMNQTSLSTIDKTLPNILNYDELLSMGDPGFTPLPNKEYSPISVNYTSGSTGKHKGVVYSHRATYLNSLATINRSNMQTVPVFLWTVDMFSCNGWCFVWAMAAIGGTNICLRKVSAEVIFEAILLHKVTLFCGAPAILKLIAEAPASIRRPLPRRVNLIIAGALPVPDVLNKVRIRRQPWLRHD 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2411820 2413131 + BLOR07348 Blo16g00100 71291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00100 290 SUPERFAMILY Acetyl-CoA synthetase-like 46 280 - -
Blo16g00100 290 Pfam AMP-binding enzyme 47 278 IPR000873 -
Blo16g00100 290 Gene3D - 37 288 IPR042099 -
Blo16g00100 290 PANTHER ACYL-ACTIVATING ENZYME 46 280 - -
Blo16g00100 290 PANTHER FATTY ACYL-COA SYNTHETASE FAMILY PROTEIN 46 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00100 - - - vvi:100261122 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00100 Blo-Chr16:2411820 Blo02g00483 Blo-Chr2:7168832 6.43E-47 dispersed
Blo16g00100 Blo-Chr16:2411820 Blo16g00103 Blo-Chr16:2419968 5.61E-146 proximal
Blo01g01631 Blo-Chr1:56166834 Blo16g00100 Blo-Chr16:2411820 1.27E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1171 . Blo16g00100 Bda04g00359 . . . . Bma15g00900 . . . . . . Sed14g0208 Cpe19g00547 . Bhi03g01403 Tan03g1361 Cmetu08g1663 . Hepe04g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01069 Csa06g02816 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011012 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00100 Blo_Chr16 FPKM 4.507873 6.509153 3.782048 4.297268 6.743066 6.111855 6.899158 47.183376 46.584461 47.969345