Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00104 ATGCGCGCCATTGCAGTTCAGCTTCTCGTGGCGGTTTCTGTGACGGCCGATGGCGGTTTACTTCTCGCTTCAGCGGCCTCATTCTGCGTTATTGGCAGCTTATTTTTAGTGGCGGTCTTTTCTGCGGTTGAAAATCTGAATTGTGATTTACAGAGATTCAAGCACTCTATGGCTGAAGGTGGAGTGCATGCTCAGTCGTATCAAGAAATGGATTATAATTCTGAGGCACGAAGAGGTATTTCCCACATTGACACTTCAAAATGGAAAAAGGTAGATGCTAGAATCTTTGGGATACATCGTGGGATGATTTCGTCTCCGACTTGGACTGTCCTTAGAGTTCTTCGTGATAAAGGCTTTGAAGTCTACTTAGTTGGTGGATGCGTGCGTGACTTAATCCTGCATAGAGTACCAAAAGACTTTGACGTGATCACTTCAGCAGGACTGCAACAGATCCGGAAGCTATTTCATCGGGCACCAACTGTTGGACGGCGTTTTCCTATTTGTAGGGTGCATATTAAAGACTCTGTAATTGAGGTTTCAAGTTTTCATACAGTGGCAAAATTGAAAAATTCAAAAGAGAAAGATATTGTTGCATATCCTCAAATGACGAGAGGCTGCAATGATAGAGACTTGAAGCTCTGGAGTAACTCCATGGGCCGGGACTTCACAATTAACAGCAGTTTATTCTTTGATCCTTTGATCAACATCATCTATGATTATGCTGACGGAATGGCTGACATAAAGGCTTTAAAGCTTAGGACTATAATTCCTGCTCCATTGTCATTTGAAGAGGATTGTGCAAGAATGCTAAGGGGCATAAGAATTGCGGCTCGTTTGGGGTTTTCATTTTCAAGCCACACTGAAAAGACCATGCATAAACTTTCTTTTTCTATTAAGAGTTTGTCCAAGGTCAGGTTAATGATGGAATTGAACTATATGCTGTCTTATGGAGCTGCAGAGTCCTCTATCTGTTTGCTTCAGAGGTTCAACATCCTTGAAATACTCCTACCACATCATGTACATTGTTTTCAGATACTAGATCATCTGTTGAGTACATGCTTTTATGCAGCTTACCTCAATCAACAGGCTCTGAGGGACCCTCACAATTCAATTATGTTGCTGAAATTGTTCTTCAATTTGGATAAAGTTGTTTCGTGTGATCGACCTTCGGACAGCAATATGTGGTTGGGACTGTTGGCTTTTCATCTGACATTAGTAAACAACCCTCAAGATGCTCTTTATGTTCGCGCTTTTGCTGCTATACTCTATCATGGGACGTGGGAAGAAGGTGTAAAATTTGCAAGAGAAAACTCTCGAGTGGAAGTTAACTTTGATCCTGAAATTACAGCATCCTCTCACTTTAAATCAGATGAAGATCTTGCTAAAGGGATTGTAAAGATTGCTTCTTTAGTTCGAGATTTTATTTTTGCTTTCTCTGAGACAGATTTTTCTGGGGTGTTAACCGCTCATCCTTTTTCGGTAAGAAATAGATCTGTATTTTTATCAAAGAAAGCAGCTGAAAATGTTGCAGAAATTTTCAGAGTGCTACTGGTTGATGTTGAATTGTACAAGTCTGGAAGAGAGAGTTTTGCAATTGACTACCTTTTGTTAGGTAAGGGCGACCTTCTGGAGACCAGATTTGTTATGGGAAAAGTCATCTTGGAGACTATTTGCGGCGGAATTGTTCAGCACGAGCCAGAGGTACTCTTGGAGAATTATGGCCGGGGAGATGGGGAAATTACAAATATGGCACTTTCTGATCTTATGACGCATCAAATGGGGGAGAAACATTATGGAAAAAGGGCCCCATCGCCTTGTGCACTGCATGAAAAAAGGGCTAAGAAGCAAAAGGACAATCATCATGGGCAGGATATTGCTAGAAAGAGAGAAACTATTGTTCAAAACTGGAAGTACGGCAACAGATTAGTAGAGGGAGAGAGAAAAACACTGACACGCAGGGGCCAAGTGGCAGAAGTGGAGAGGACTAAGAAGGAGCAAGACACTCTTGCAAATGAGAGAATCTGTGTTAAATCTAACAGTAAAAGGATGCGCCAAGTTTCGCCGATAAAAACTACGAAGAAGCAGCTGGAAGGAGGAAAGAGTAGTATTGGCCCGGTGGAGGAGGGAAAAGAGCAGCGGGCTGTGTTGGAGAAGCTAAAGGAAGCCAATGGTGAATTAGCAAAGCACATGCAAACCAAGCCCCTATCCAGCCTCTTCAAATGA 2223 42.2 MRAIAVQLLVAVSVTADGGLLLASAASFCVIGSLFLVAVFSAVENLNCDLQRFKHSMAEGGVHAQSYQEMDYNSEARRGISHIDTSKWKKVDARIFGIHRGMISSPTWTVLRVLRDKGFEVYLVGGCVRDLILHRVPKDFDVITSAGLQQIRKLFHRAPTVGRRFPICRVHIKDSVIEVSSFHTVAKLKNSKEKDIVAYPQMTRGCNDRDLKLWSNSMGRDFTINSSLFFDPLINIIYDYADGMADIKALKLRTIIPAPLSFEEDCARMLRGIRIAARLGFSFSSHTEKTMHKLSFSIKSLSKVRLMMELNYMLSYGAAESSICLLQRFNILEILLPHHVHCFQILDHLLSTCFYAAYLNQQALRDPHNSIMLLKLFFNLDKVVSCDRPSDSNMWLGLLAFHLTLVNNPQDALYVRAFAAILYHGTWEEGVKFARENSRVEVNFDPEITASSHFKSDEDLAKGIVKIASLVRDFIFAFSETDFSGVLTAHPFSVRNRSVFLSKKAAENVAEIFRVLLVDVELYKSGRESFAIDYLLLGKGDLLETRFVMGKVILETICGGIVQHEPEVLLENYGRGDGEITNMALSDLMTHQMGEKHYGKRAPSPCALHEKRAKKQKDNHHGQDIARKRETIVQNWKYGNRLVEGERKTLTRRGQVAEVERTKKEQDTLANERICVKSNSKRMRQVSPIKTTKKQLEGGKSSIGPVEEGKEQRAVLEKLKEANGELAKHMQTKPLSSLFK 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2438657 2447461 - BLOR07352 Blo16g00104 71295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00104 740 Gene3D Beta Polymerase, domain 2 102 253 IPR043519 -
Blo16g00104 740 CDD NT_ClassII-CCAase 110 249 IPR002646 GO:0003723|GO:0006396|GO:0016779
Blo16g00104 740 SUPERFAMILY Nucleotidyltransferase 96 248 IPR043519 -
Blo16g00104 740 Pfam Poly A polymerase head domain 121 253 IPR002646 GO:0003723|GO:0006396|GO:0016779
Blo16g00104 740 Gene3D - 254 442 - -
Blo16g00104 740 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 55 740 - -
Blo16g00104 740 Pfam Probable RNA and SrmB- binding site of polymerase A 280 339 IPR032828 -
Blo16g00104 740 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 55 740 - -
Blo16g00104 740 MobiDBLite consensus disorder prediction 690 712 - -
Blo16g00104 740 SUPERFAMILY Poly A polymerase C-terminal region-like 251 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00104 - - - jre:109014131 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00205 Blo-Chr2:1883049 Blo16g00104 Blo-Chr16:2438657 1.23E-94 dispersed
Blo16g00104 Blo-Chr16:2438657 Blo17g00156 Blo-Chr17:1456830 2.88E-07 dispersed
Blo16g00104 Blo-Chr16:2438657 Blo06g01156 Blo-Chr6:34967385 1.39E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1182 . Blo16g00104 . . . Bpe13g00392 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1700 Cone9ag1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01062 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00104 Blo_Chr16 FPKM 0.294189 0.327454 0.506612 0.632274 1.289505 1.403549 1.315574 1.113639 1.086898 1.105792