Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00107 ATGATGAAGTGGGAAAACCCTGAAGAATTTCATTCCCGTCCTCATAGGTCACTGCGAGAAGATGTTTCACAGATGGAGGAACCTCAACATGGCAATGGGAATCGAGGGGTTTTGTACTTGAAGGTGATGACTGACGAGCAATTAGAGACTCTTCGCAAGCAAATCGCTGTTTACGCCTCCATTTGCGACCAGCTCGTGGAGATGCATAAAACCCTCACTTCCCAGCAGGATCCTTCAGGAATCAGGCTTGGTAGCTTATATTGTGAGCCATTAATGGCTTCTTCTGGCCACAAAATCACTTCAAGACAGCGATGGACTCCAACCCCTGTTCAGCTTCAGATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGCAGAAAATAAAAGAGATAACATCCGAACTGATCCAGAACGGCCAAATTTCTGAAACAAATGTCTACAATTGGTTCCAGAACAGGCGAGCTCGATCAAAGAGGAAACAACAAAATTCAGCCCCAGTTAATGCCGAATCAGAAGCCGAGACTGATAATGAGTCGCCAAATGAAAACGAGATGAAACGAATGGATTTTCAATCCAAACAGAACAACCCTACGTCCATGGCTGATGATCTGCGATTCCAGATCACTGAGAGCGGCGCTGATTTTCCTTTTTTAGATGGAAGAATCAACAAAGCTGAGATTTTGATTCCCTCGAATGGAACTGTAAAAAATGGGAGAAATTTGGGTCAAATGTCGTTTTACGAGGATGATGAACATCTGATAGGAAAACTGGAAATGATGGAGAACTACAATTTGTATCAGCAATCAGAAGAATACAGCTTGACTGGGTGA 840 43.33 MMKWENPEEFHSRPHRSLREDVSQMEEPQHGNGNRGVLYLKVMTDEQLETLRKQIAVYASICDQLVEMHKTLTSQQDPSGIRLGSLYCEPLMASSGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELIQNGQISETNVYNWFQNRRARSKRKQQNSAPVNAESEAETDNESPNENEMKRMDFQSKQNNPTSMADDLRFQITESGADFPFLDGRINKAEILIPSNGTVKNGRNLGQMSFYEDDEHLIGKLEMMENYNLYQQSEEYSLTG 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2484489 2486263 - BLOR07355 Blo16g00107 71298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00107 279 SMART HOX_1 100 167 IPR001356 GO:0003677
Blo16g00107 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 278 IPR044559 GO:0003700
Blo16g00107 279 ProSiteProfiles 'Homeobox' domain profile. 98 163 IPR001356 GO:0003677
Blo16g00107 279 PANTHER - 2 278 - -
Blo16g00107 279 CDD homeodomain 102 164 IPR001356 GO:0003677
Blo16g00107 279 MobiDBLite consensus disorder prediction 1 26 - -
Blo16g00107 279 Gene3D - 104 168 - -
Blo16g00107 279 MobiDBLite consensus disorder prediction 1 33 - -
Blo16g00107 279 Pfam Homeodomain 102 162 IPR001356 GO:0003677
Blo16g00107 279 MobiDBLite consensus disorder prediction 158 187 - -
Blo16g00107 279 SUPERFAMILY Homeodomain-like 100 165 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00107 - - - qsu:112005537 351.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00107 Blo-Chr16:2484489 Blo01g00756 Blo-Chr1:10156514 4.88E-13 dispersed
Blo16g00107 Blo-Chr16:2484489 Blo16g00114 Blo-Chr16:2683378 4.74E-13 proximal
Blo01g01638 Blo-Chr1:56208171 Blo16g00107 Blo-Chr16:2484489 4.43E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1199 . Blo16g00107 . . . Bpe13g00389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00075 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13370 PF00046 Homeodomain 2.20E-18 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00107 Blo_Chr16 FPKM 22.661018 25.106735 12.773676 14.941448 34.726406 33.830925 34.188396 28.465414 26.651388 29.203835